Variant report

Variant	rs59440261
Chromosome Location	chr6:31371071-31371072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31370965-31371553	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr6:31370662-31371677	PANC-1	pancreas:	n/a	n/a
3	MYC	chr6:31370975-31371566	K562	blood:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
4	MAX	chr6:31370953-31371764	SK-N-SH	brain:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
5	TCF12	chr6:31370876-31371778	ECC-1	luminal epithelium:	n/a	chr6:31371639-31371649
6	MYC	chr6:31370896-31371214	H1-hESC	embryonic stem cell:	n/a	n/a
7	ZBTB7A	chr6:31370877-31371754	ECC-1	luminal epithelium:	n/a	chr6:31371063-31371074 chr6:31371062-31371073 chr6:31371049-31371058
8	ZBTB7A	chr6:31370907-31371794	ECC-1	luminal epithelium:	n/a	chr6:31371063-31371074 chr6:31371062-31371073 chr6:31371049-31371058
9	SP1	chr6:31370968-31371660	A549	lung:	n/a	chr6:31371258-31371268 chr6:31371266-31371287 chr6:31371258-31371267 chr6:31371258-31371272 chr6:31371257-31371268 chr6:31371197-31371208 chr6:31371259-31371268 chr6:31371016-31371023 chr6:31371257-31371269 chr6:31371569-31371578 chr6:31371257-31371269
10	MAZ	chr6:31371028-31371737	K562	blood:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
11	POLR2A	chr6:31370991-31371250	A549	lung:	n/a	n/a
12	POLR2A	chr6:31370225-31371676	PANC-1	pancreas:	n/a	n/a
13	ZBTB7A	chr6:31370935-31371125	HepG2	liver:	n/a	chr6:31371063-31371074 chr6:31371062-31371073 chr6:31371049-31371058
14	E2F6	chr6:31370726-31371799	H1-hESC	embryonic stem cell:	n/a	chr6:31371277-31371286 chr6:31371505-31371514 chr6:31371050-31371059
15	POLR2A	chr6:31371014-31371556	GM18951	blood:	n/a	n/a
16	POLR2A	chr6:31371037-31371231	GM12878	blood:	n/a	n/a
17	GABPA	chr6:31370981-31371878	MCF-7	breast:	n/a	chr6:31371050-31371059 chr6:31371052-31371061
18	ELF1	chr6:31371014-31372018	GM12878	blood:	n/a	chr6:31371364-31371376
19	POLR2A	chr6:31370821-31372025	K562	blood:	n/a	n/a
20	TAF1	chr6:31370887-31371726	ECC-1	luminal epithelium:	n/a	n/a
21	NFYA	chr6:31371014-31371662	K562	blood:	n/a	n/a
22	NFYA	chr6:31371045-31371493	Hela-S3	cervix:	n/a	n/a
23	MAX	chr6:31371023-31371562	K562	blood:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
24	TAF1	chr6:31370716-31371588	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr6:31370777-31371795	HepG2	liver:	n/a	n/a
26	TEAD4	chr6:31371007-31371472	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr6:31370858-31371728	MCF-7	breast:	n/a	n/a
28	TAF1	chr6:31370866-31371717	ECC-1	luminal epithelium:	n/a	n/a
29	MAX	chr6:31370732-31371883	HepG2	liver:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
30	POLR2A	chr6:31370952-31371589	HepG2	liver:	n/a	n/a
31	POLR2A	chr6:31371034-31371643	K562	blood:	n/a	n/a
32	RCOR1	chr6:31371044-31371734	Hela-S3	cervix:	n/a	n/a
33	HEY1	chr6:31370735-31371658	HepG2	liver:	n/a	chr6:31371160-31371175
34	MAX	chr6:31370706-31371920	A549	lung:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
35	POLR2A	chr6:31371038-31371703	HL-60	blood:	n/a	n/a
36	MAX	chr6:31370760-31371858	H1-hESC	embryonic stem cell:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
37	POLR2A	chr6:31371050-31371571	GM12892	blood:	n/a	n/a
38	E2F6	chr6:31370911-31371796	K562	blood:	n/a	chr6:31371277-31371286 chr6:31371505-31371514 chr6:31371050-31371059
39	POLR2A	chr6:31370795-31371859	H1-hESC	embryonic stem cell:	n/a	n/a
40	TAF1	chr6:31370810-31371934	HepG2	liver:	n/a	n/a
41	POLR2A	chr6:31370714-31371822	Hela-S3	cervix:	n/a	n/a
42	TAF1	chr6:31371033-31371598	H1-hESC	embryonic stem cell:	n/a	n/a
43	USF1	chr6:31371058-31371508	HepG2	liver:	n/a	n/a
44	NFYB	chr6:31371059-31371500	GM12878	blood:	n/a	chr6:31371304-31371319 chr6:31371275-31371290
45	POLR2A	chr6:31371021-31371205	A549	lung:	n/a	n/a
46	POLR2A	chr6:31369105-31372194	SK-N-MC	brain:	n/a	n/a
47	POLR2A	chr6:31370853-31371835	MCF-7	breast:	n/a	n/a
48	POLR2A	chr6:31370736-31371554	HepG2	liver:	n/a	n/a
49	TBP	chr6:31370828-31371661	H1-hESC	embryonic stem cell:	n/a	n/a
50	MYC	chr6:31371013-31371186	MCF-7	breast:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31371071-31371121	NH-A	brain:	n/a
2	chr6:31371071-31371121	AG10803	skin:	n/a
3	chr6:31371071-31371121	SK-N-SH_RA	brain:	n/a
4	chr6:31371071-31371121	LNCaP	prostate:	n/a
5	chr6:31371071-31371121	MCF-7	breast:	n/a
6	chr6:31371037-31371087	Hela-S3	cervix:	n/a
7	chr6:31371037-31371087	CMK	blood:	n/a
8	chr6:31371071-31371121	HNPCEpiC	eye:	n/a
9	chr6:31371037-31371087	BE2_C	brain:	n/a
10	chr6:31371037-31371087	HCT-116	colon:	n/a
11	chr6:31371037-31371087	HCF	heart:	n/a
12	chr6:31371037-31371087	T-47D	breast:	n/a
13	chr6:31371071-31371121	HIPEpiC	eye:	n/a
14	chr6:31371037-31371087	Hepatocyte	liver:	n/a
15	chr6:31371071-31371121	CMK	blood:	n/a
16	chr6:31371071-31371121	HMEC	breast:	n/a
17	chr6:31371037-31371087	AG04449	skin:	fetal
18	chr6:31371071-31371121	HCT-116	colon:	n/a
19	chr6:31371037-31371087	A549	lung:	n/a
20	chr6:31371037-31371087	GM12891	blood:	n/a
21	chr6:31371071-31371121	SK-N-MC	brain:	n/a
22	chr6:31371071-31371121	HCM	heart:	n/a
23	chr6:31371037-31371087	BJ	skin:	n/a
24	chr6:31371071-31371121	HCPEpiC	choroid plexus:	n/a
25	chr6:31371071-31371121	AoSMC	blood vessel:	n/a
26	chr6:31371037-31371087	HNPCEpiC	eye:	n/a
27	chr6:31371071-31371121	HAEpiC	amniotic membrane:	n/a
28	chr6:31371037-31371087	LNCaP	prostate:	n/a
29	chr6:31371071-31371121	SK-N-SH	brain:	n/a
30	chr6:31371037-31371087	SK-N-MC	brain:	n/a
31	chr6:31371071-31371121	Hela-S3	cervix:	n/a
32	chr6:31371037-31371087	GM06990	blood:	n/a
33	chr6:31371071-31371121	NHDF-neo	bronchial:	n/a
34	chr6:31371071-31371121	PANC-1	pancreas:	n/a
35	chr6:31371071-31371121	PFSK-1	brain:	n/a
36	chr6:31371037-31371087	GM12878	blood:	n/a
37	chr6:31371037-31371087	SKMC	muscle:	n/a
38	chr6:31371037-31371087	HPAEpiC	pulmonary alveolar:	n/a
39	chr6:31371071-31371121	ECC-1	luminal epithelium:	n/a
40	chr6:31371071-31371121	GM12891	blood:	n/a
41	chr6:31371037-31371087	ovcar-3	ovarian:	n/a
42	chr6:31371037-31371087	ECC-1	luminal epithelium:	n/a
43	chr6:31371037-31371087	H1-hESC	embryonic stem cell:	embryo
44	chr6:31371071-31371121	U87	brain:	n/a
45	chr6:31371037-31371087	GM19239	blood:	n/a
46	chr6:31371037-31371087	ProgFib	skin:	n/a
47	chr6:31371071-31371121	Hepatocyte	liver:	n/a
48	chr6:31371037-31371087	AG09319	gingival:	n/a
49	chr6:31371071-31371121	Caco-2	colon:	n/a
50	chr6:31371071-31371121	GM06990	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31370507..31371330-chr6:31465173..31465987,2	Hela-S3	cervix:
2	chr6:31368987..31371166-chr6:31508549..31510652,2	K562	blood:
3	chr6:31370403..31371134-chr6:31465031..31465964,2	MCF-7	breast:
4	chr6:31137284..31139502-chr6:31369827..31372777,2	K562	blood:
5	chr16:87425195..87426116-chr6:31370770..31371340,2	Hela-S3	cervix:
6	chr6:31367433..31369345-chr6:31370082..31372191,3	MCF-7	breast:
7	chr6:31369734..31371569-chr6:31409122..31410945,2	MCF-7	breast:
8	chr6:31366610..31369320-chr6:31369483..31372950,5	MCF-7	breast:
9	chr17:41465639..41466316-chr6:31370631..31371428,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000199332	TF binding region
MICA	TF binding region
ENSG00000199332	CpG island
MICA	CpG island
ENSG00000188825	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000206337	Chromatin interaction
ENSG00000103264	Chromatin interaction
ENSG00000230174	Chromatin interaction
ENSG00000204531	Chromatin interaction
ENSG00000204516	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000140941	Chromatin interaction

Extended variants
information (count: 289 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17200095	1.00[ASN][1000 genomes]
rs2395029	1.00[ASN][1000 genomes]
rs2923003	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57989216	1.00[AMR][1000 genomes]
rs58102217	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:284 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
10	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
12	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
13	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
16	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
17	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
18	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
19	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
21	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
23	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
24	nsv1029508	chr6:31269776-31445712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
25	nsv538182	chr6:31269776-31445712	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
26	esv1830805	chr6:31269777-31450100	Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
27	esv33563	chr6:31275505-31453668	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
28	nsv601570	chr6:31276751-31451476	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
29	nsv538184	chr6:31277798-31445712	Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
30	nsv1029678	chr6:31279535-31449207	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
31	nsv538185	chr6:31279535-31449207	Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
32	nsv1022451	chr6:31279535-31485736	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
33	nsv601608	chr6:31280101-31389784	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
34	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
35	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
36	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
37	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
38	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
39	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
40	nsv601660	chr6:31281770-31451476	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
41	nsv538186	chr6:31282952-31445712	Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
42	nsv869722	chr6:31287397-31461074	Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
43	nsv884319	chr6:31308988-31430721	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
44	esv3491002	chr6:31310527-31398831	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
45	esv3491003	chr6:31310527-31398831	Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
46	esv1828258	chr6:31316612-31456605	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
47	nsv538187	chr6:31325961-31445712	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
48	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
49	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
50	nsv517441	chr6:31336100-31463963	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs59440261	MICB	Cis_1M	lymphoblastoid	RTeQTL
rs59440261	MICA///MICB	N/A	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31367400-31372000	Active TSS	Aorta	Aorta
2	chr6:31367800-31371200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
3	chr6:31367800-31372600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:31368600-31371200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
5	chr6:31368600-31372400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr6:31368800-31371200	Flanking Active TSS	Hela-S3	cervix
7	chr6:31368800-31371200	Flanking Active TSS	HUVEC	blood vessel
8	chr6:31368800-31371200	Flanking Active TSS	Osteobl	bone
9	chr6:31368800-31372000	Flanking Active TSS	Dnd41	blood
10	chr6:31368800-31372400	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr6:31368800-31372400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:31369000-31371200	Flanking Active TSS	NH-A	brain
13	chr6:31369600-31371200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:31369600-31371200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:31369600-31371200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr6:31369600-31371200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:31369600-31371200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:31369600-31372400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr6:31369800-31371200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:31369800-31372200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr6:31369800-31372400	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr6:31369800-31372400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr6:31370000-31371200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:31370000-31371200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:31370000-31371200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
26	chr6:31370000-31372000	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr6:31370000-31372400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr6:31370000-31372400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:31370000-31372400	Flanking Active TSS	Colonic Mucosa	Colon
30	chr6:31370000-31372400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr6:31370200-31371200	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr6:31370200-31371200	Flanking Active TSS	K562	blood
33	chr6:31370200-31372200	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr6:31370200-31372200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr6:31370200-31372400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr6:31370200-31372400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:31370400-31371200	Flanking Active TSS	Right Ventricle	heart
38	chr6:31370400-31372000	Active TSS	Esophagus	oesophagus
39	chr6:31370400-31372000	Bivalent/Poised TSS	Fetal Kidney	kidney
40	chr6:31370400-31372200	Flanking Active TSS	Liver	Liver
41	chr6:31370400-31372200	Active TSS	Right Atrium	heart
42	chr6:31370400-31372400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
43	chr6:31370400-31372400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
44	chr6:31370600-31371200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr6:31370600-31371200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
46	chr6:31370600-31371200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
47	chr6:31370600-31371600	Active TSS	Gastric	stomach
48	chr6:31370600-31371600	Active TSS	Rectal Smooth Muscle	rectum
49	chr6:31370600-31371800	Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr6:31370600-31371800	Active TSS	Primary T killer naive cells fromperipheralblood	blood

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