Variant report

Variant	rs59446421
Chromosome Location	chr7:26666584-26666585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26664430..26667382-chr7:26681275..26683540,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1012803	0.81[EUR][1000 genomes]
rs10242687	0.88[EUR][1000 genomes]
rs10248160	0.85[EUR][1000 genomes]
rs10251530	0.88[ASN][1000 genomes]
rs10252153	0.86[ASN][1000 genomes]
rs10276138	0.88[ASN][1000 genomes]
rs1029436	0.99[ASN][1000 genomes]
rs10452789	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10486471	0.99[ASN][1000 genomes]
rs1125542	0.86[EUR][1000 genomes]
rs212832	0.85[EUR][1000 genomes]
rs28639403	0.88[ASN][1000 genomes]
rs35970226	0.99[ASN][1000 genomes]
rs59472926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60101479	0.88[ASN][1000 genomes]
rs60481941	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61639217	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62446548	0.86[ASN][1000 genomes]
rs62446549	0.88[ASN][1000 genomes]
rs62446555	0.99[ASN][1000 genomes]
rs62447660	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62447699	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6967136	0.87[ASN][1000 genomes]
rs6967151	0.87[ASN][1000 genomes]
rs6967592	0.87[ASN][1000 genomes]
rs7785804	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1021253	chr7:26653375-26669899	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26656200-26666600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:26656800-26667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:26665000-26667400	Weak transcription	Right Atrium	heart
4	chr7:26665200-26667400	Weak transcription	Pancreas	Pancrea
5	chr7:26666000-26667200	Weak transcription	Lung	lung
6	chr7:26666400-26667600	Enhancers	Brain Germinal Matrix	brain

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