Variant report

Variant	rs59449467
Chromosome Location	chr3:133673073-133673074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133662471..133664232-chr3:133672170..133673874,2	MCF-7	breast:
2	chr3:133672325..133674321-chr3:133674687..133676579,2	MCF-7	breast:
3	chr3:133653327..133655390-chr3:133672919..133674520,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56121217	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58343304	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133660800-133676400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:133664000-133676000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:133664800-133713000	Weak transcription	Gastric	stomach
6	chr3:133665000-133673400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:133667600-133676200	Weak transcription	Psoas Muscle	Psoas
8	chr3:133668400-133674800	Weak transcription	Right Ventricle	heart
9	chr3:133668400-133675200	Weak transcription	Right Atrium	heart
10	chr3:133668400-133685600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:133668600-133674800	Weak transcription	HUVEC	blood vessel
12	chr3:133668600-133675200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:133668800-133674200	Weak transcription	Brain Germinal Matrix	brain
14	chr3:133670200-133680200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:133670600-133687000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:133670800-133674000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:133671200-133674000	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:133671200-133674800	Weak transcription	Fetal Stomach	stomach
19	chr3:133671400-133673400	Weak transcription	Spleen	Spleen
20	chr3:133671400-133674000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr3:133671400-133674600	Weak transcription	Lung	lung
22	chr3:133672400-133676000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr3:133672600-133681400	Weak transcription	Esophagus	oesophagus

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