Variant report

Variant	rs59450926
Chromosome Location	chr11:64456986-64456987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64451239..64453291-chr11:64456296..64459246,2	MCF-7	breast:
2	chr11:64455550..64457033-chr11:64471436..64472450,6	MCF-7	breast:
3	chr11:64454763..64457132-chr11:64459116..64461496,2	K562	blood:
4	chr11:64454637..64457192-chr11:64487658..64491640,3	K562	blood:
5	chr11:64456116..64458065-chr11:64530608..64532539,2	K562	blood:
6	chr11:64456698..64457473-chr11:64490581..64491339,2	MCF-7	breast:
7	chr11:64456832..64458723-chr11:64460290..64461940,2	K562	blood:
8	chr11:64455051..64459063-chr11:64526543..64532108,4	K562	blood:
9	chr11:64455208..64457663-chr11:64463168..64465693,2	K562	blood:
10	chr11:64452341..64454041-chr11:64456266..64457869,2	MCF-7	breast:
11	chr11:64419216..64421047-chr11:64455439..64457519,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110076	Chromatin interaction
ENSG00000068976	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2285341	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55706123	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55860015	1.00[AMR][1000 genomes]
rs56946751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57362080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv468596	chr11:64334114-64527080	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv555195	chr11:64334114-64527080	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv818842	chr11:64345448-64546391	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
7	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
8	nsv555196	chr11:64357072-64559898	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
9	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
10	nsv1051350	chr11:64372906-64533632	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv555198	chr11:64373899-64573589	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
12	esv1804443	chr11:64386453-64534785	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv897697	chr11:64447420-64584959	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
14	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
15	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
16	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64456400-64457000	Enhancers	Primary B cells from cord blood	blood
2	chr11:64456400-64457000	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:64456400-64457200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:64456400-64458600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:64456400-64458600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:64456400-64459600	Weak transcription	Primary T cells from cord blood	blood
7	chr11:64456400-64462200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:64456600-64457000	Enhancers	Brain Anterior Caudate	brain
9	chr11:64456600-64457000	Enhancers	Fetal Stomach	stomach
10	chr11:64456600-64457000	Enhancers	Dnd41	blood
11	chr11:64456600-64457200	Enhancers	Brain Germinal Matrix	brain
12	chr11:64456600-64457200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:64456600-64457200	Enhancers	Colon Smooth Muscle	Colon
14	chr11:64456600-64457400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:64456600-64457400	Enhancers	Brain Angular Gyrus	brain
16	chr11:64456600-64457600	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:64456600-64457800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:64456600-64457800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:64456600-64458000	Enhancers	Fetal Muscle Leg	muscle
20	chr11:64456600-64458200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:64456600-64458200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:64456600-64458800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:64456600-64459800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:64456600-64460000	Weak transcription	Fetal Brain Male	brain
25	chr11:64456600-64460200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:64456600-64460200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:64456600-64460200	Weak transcription	Fetal Brain Female	brain
28	chr11:64456600-64460400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:64456800-64457400	Enhancers	Brain Substantia Nigra	brain
30	chr11:64456800-64457600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:64456800-64457800	Enhancers	Brain Cingulate Gyrus	brain
32	chr11:64456800-64457800	Enhancers	Stomach Smooth Muscle	stomach
33	chr11:64456800-64458200	Enhancers	Brain Hippocampus Middle	brain
34	chr11:64456800-64459600	Weak transcription	Fetal Thymus	thymus
35	chr11:64456800-64461800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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