Variant report

Variant	rs59459696
Chromosome Location	chr11:86583151-86583152
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86577401..86581075-chr11:86581789..86584675,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10128675	0.86[ASN][1000 genomes]
rs10898547	0.86[ASN][1000 genomes]
rs10898550	0.86[ASN][1000 genomes]
rs10898551	0.86[ASN][1000 genomes]
rs11234842	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234861	0.89[ASN][1000 genomes]
rs11234866	0.89[ASN][1000 genomes]
rs11234867	0.89[ASN][1000 genomes]
rs17149479	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149491	0.86[ASN][1000 genomes]
rs17149495	0.89[ASN][1000 genomes]
rs17149499	0.89[ASN][1000 genomes]
rs56315708	0.89[ASN][1000 genomes]
rs57622507	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67465513	0.86[ASN][1000 genomes]
rs7107970	0.86[ASN][1000 genomes]
rs7107991	0.86[ASN][1000 genomes]
rs7118936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119845	0.86[ASN][1000 genomes]
rs7128832	0.86[ASN][1000 genomes]
rs7130099	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7131566	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86562600-86585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:86563200-86598800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86566800-86585800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:86576800-86599800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:86578200-86593400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:86578200-86627400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86578400-86585400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:86580600-86583200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:86580600-86583800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:86581000-86585000	Weak transcription	HSMMtube	muscle
11	chr11:86581200-86585200	Weak transcription	HSMM	muscle
12	chr11:86581600-86584600	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:86581600-86585400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:86581600-86588000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:86582000-86584000	Enhancers	Ovary	ovary
16	chr11:86582200-86583200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:86582400-86583200	Enhancers	HMEC	breast
18	chr11:86582400-86583600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:86582600-86583200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:86582600-86583200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:86582800-86589600	Weak transcription	Aorta	Aorta
22	chr11:86582800-86601600	Weak transcription	Left Ventricle	heart
23	chr11:86583000-86583200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:86583000-86583200	Enhancers	Stomach Smooth Muscle	stomach

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