Variant report

Variant	rs594706
Chromosome Location	chr21:44791416-44791417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:44788189..44792112-chr21:44793177..44796400,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1034360	0.89[EUR][1000 genomes]
rs34217534	0.89[EUR][1000 genomes]
rs481767	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs553708	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553932	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570905	0.87[EUR][1000 genomes]
rs573283	0.86[ASN][1000 genomes]
rs573544	0.87[ASN][1000 genomes]
rs592109	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs592487	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598771	0.86[EUR][1000 genomes]
rs607398	0.85[ASN][1000 genomes]
rs653435	0.87[ASN][1000 genomes]
rs672226	0.87[EUR][1000 genomes]
rs8131841	0.82[EUR][1000 genomes]
rs857568	0.87[ASN][1000 genomes]
rs857572	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056684	chr21:44539714-44886119	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv913831	chr21:44563995-44931821	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
3	esv1817359	chr21:44699077-44821595	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057726	chr21:44711850-44957303	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
5	nsv544466	chr21:44711850-44957303	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
6	nsv1058308	chr21:44722915-44825108	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1063186	chr21:44729904-44828476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv544467	chr21:44729904-44828476	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv913837	chr21:44731138-44853859	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv913838	chr21:44740134-44931821	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
11	nsv913839	chr21:44750200-44931821	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
12	nsv913840	chr21:44750643-44823479	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv913841	chr21:44761874-44853859	Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
14	nsv913842	chr21:44764895-44792929	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv913843	chr21:44774757-44810756	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv913844	chr21:44779680-44875495	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
17	nsv913845	chr21:44781356-44874702	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
18	nsv470901	chr21:44781356-44884252	Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:44782200-44791600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr21:44788400-44795800	Weak transcription	Spleen	Spleen
3	chr21:44788600-44794000	Enhancers	Esophagus	oesophagus
4	chr21:44788800-44791600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr21:44788800-44791800	Enhancers	Primary B cells from peripheral blood	blood
6	chr21:44788800-44794200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr21:44788800-44795400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr21:44789000-44794200	Enhancers	HMEC	breast
9	chr21:44789400-44791800	Enhancers	Fetal Thymus	thymus
10	chr21:44789800-44791800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr21:44790000-44792000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr21:44790000-44792600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr21:44790200-44791800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr21:44790200-44792600	Enhancers	Hela-S3	cervix
15	chr21:44790400-44791600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr21:44790400-44791800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr21:44790400-44792000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr21:44790400-44794800	Enhancers	Brain Germinal Matrix	brain
19	chr21:44790400-44802600	Weak transcription	Pancreas	Pancrea
20	chr21:44790600-44830800	Weak transcription	Right Atrium	heart
21	chr21:44790800-44791600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr21:44790800-44791800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr21:44790800-44802400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr21:44791000-44792200	Weak transcription	Fetal Stomach	stomach
25	chr21:44791000-44792400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr21:44791000-44792800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr21:44791000-44792800	Weak transcription	Fetal Lung	lung
28	chr21:44791000-44793400	Weak transcription	Brain Substantia Nigra	brain
29	chr21:44791200-44791600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr21:44791200-44791600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr21:44791200-44792600	Weak transcription	NHEK	skin
32	chr21:44791200-44793200	Weak transcription	Fetal Brain Male	brain
33	chr21:44791400-44791600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr21:44791400-44791800	Enhancers	H9 Cell Line	embryonic stem cell
35	chr21:44791400-44792800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr21:44791400-44792800	Weak transcription	Fetal Muscle Leg	muscle

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