Variant report

Variant	rs59474449
Chromosome Location	chr6:150006074-150006075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149968317..149970120-chr6:150005656..150008521,2	K562	blood:
2	chr6:150004823..150006721-chr6:150008544..150010327,2	K562	blood:
3	chr6:150005221..150006846-chr6:150008544..150010476,2	K562	blood:
4	chr6:150004563..150007128-chr6:150016460..150020712,4	MCF-7	breast:
5	chr6:150005972..150008566-chr6:150038715..150040763,2	K562	blood:

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55692529	0.91[AFR][1000 genomes]
rs57591663	0.91[AFR][1000 genomes]
rs58186084	0.83[AFR][1000 genomes]
rs59398826	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149977200-150022600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149977800-150020600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:149980000-150008000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:149980600-150024800	Strong transcription	Fetal Thymus	thymus
6	chr6:149981200-150018800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
8	chr6:149988200-150008000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:149994600-150012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:149997800-150027400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:149998000-150020800	Weak transcription	Small Intestine	intestine
12	chr6:149998000-150029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:149998800-150009600	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:150000000-150022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:150001600-150006200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:150002800-150007400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:150002800-150010200	Strong transcription	Fetal Stomach	stomach
18	chr6:150002800-150012800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:150003400-150006800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:150004000-150006800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:150004200-150006200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr6:150004200-150006200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:150004200-150006200	Strong transcription	Dnd41	blood
24	chr6:150004200-150006800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:150004200-150008200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:150004200-150017000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:150004400-150008000	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:150004400-150008600	Strong transcription	Thymus	Thymus
29	chr6:150004800-150007800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:150005200-150007600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:150005400-150007200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:150005400-150007400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:150005400-150007400	Weak transcription	Right Ventricle	heart
34	chr6:150005400-150015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:150005400-150016000	Weak transcription	Fetal Brain Male	brain
36	chr6:150005400-150021000	Weak transcription	Stomach Mucosa	stomach
37	chr6:150005400-150029800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:150005600-150007200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:150005600-150007200	Weak transcription	Brain Germinal Matrix	brain
40	chr6:150005600-150007200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:150005600-150007200	Weak transcription	HSMM	muscle
42	chr6:150005600-150007200	Weak transcription	NHEK	skin
43	chr6:150005600-150007400	Weak transcription	Brain Anterior Caudate	brain
44	chr6:150005600-150007400	Weak transcription	Left Ventricle	heart
45	chr6:150005600-150007400	Weak transcription	Pancreas	Pancrea
46	chr6:150005600-150007400	Weak transcription	Right Atrium	heart
47	chr6:150005600-150007600	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:150005600-150007600	Weak transcription	Brain Substantia Nigra	brain
49	chr6:150005600-150007600	Weak transcription	Psoas Muscle	Psoas
50	chr6:150005600-150007800	Weak transcription	Brain Angular Gyrus	brain

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