The 2.0 version of rSNPBase

Variant report

Variant rs59488646
Chromosome Location chr15:49398668-49398669
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:49381400-49402400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr15:49382600-49402400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr15:49385600-49403200 Weak transcription Placenta Placenta
4 chr15:49386400-49403400 Weak transcription Brain Hippocampus Middle brain
5 chr15:49386400-49404200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr15:49386800-49402600 Weak transcription Gastric stomach
7 chr15:49387200-49402400 Weak transcription Spleen Spleen
8 chr15:49387200-49403000 Weak transcription Dnd41 blood
9 chr15:49387400-49404200 Weak transcription Placenta Amnion Placenta Amnion
10 chr15:49388800-49402400 Weak transcription Fetal Intestine Small intestine
11 chr15:49388800-49402400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr15:49388800-49402600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr15:49388800-49402600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr15:49388800-49402600 Weak transcription Left Ventricle heart
15 chr15:49388800-49402600 Weak transcription Ovary ovary
16 chr15:49388800-49402600 Weak transcription Pancreas Pancrea
17 chr15:49388800-49402600 Weak transcription Thymus Thymus
18 chr15:49388800-49402800 Weak transcription Lung lung
19 chr15:49388800-49404400 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr15:49388800-49404600 Weak transcription Hela-S3 cervix
21 chr15:49388800-49418800 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr15:49388800-49434800 Weak transcription Small Intestine intestine
23 chr15:49389600-49404400 Weak transcription HepG2 liver
24 chr15:49390400-49403000 Weak transcription Aorta Aorta
25 chr15:49390800-49403000 Weak transcription Stomach Smooth Muscle stomach
26 chr15:49391200-49402400 Weak transcription Fetal Muscle Trunk muscle
27 chr15:49391400-49402400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr15:49391400-49402600 Weak transcription Fetal Muscle Leg muscle
29 chr15:49391400-49404200 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr15:49391600-49402400 Weak transcription Esophagus oesophagus
31 chr15:49391600-49402600 Weak transcription Fetal Stomach stomach
32 chr15:49391800-49403400 Weak transcription Primary T regulatory cells fromperipheralblood blood
33 chr15:49392000-49402400 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr15:49392000-49403200 Weak transcription Fetal Thymus thymus
35 chr15:49392200-49402600 Weak transcription Psoas Muscle Psoas
36 chr15:49392400-49403000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr15:49393400-49402800 Weak transcription A549 lung
38 chr15:49393600-49402400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr15:49393600-49404200 Weak transcription Brain Anterior Caudate brain
40 chr15:49393600-49404200 Weak transcription Brain Substantia Nigra brain
41 chr15:49393600-49413200 Weak transcription HMEC breast
42 chr15:49394000-49404600 Weak transcription Brain Cingulate Gyrus brain
43 chr15:49394600-49402600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr15:49394800-49399000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr15:49395200-49402800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr15:49395400-49399000 Strong transcription GM12878-XiMat blood
47 chr15:49395400-49403400 Weak transcription Primary T helper cells PMA-I stimulated --
48 chr15:49395400-49419000 Weak transcription Fetal Kidney kidney
49 chr15:49395600-49399200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr15:49395600-49402400 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015