Variant report

Variant	rs59495246
Chromosome Location	chr3:112050638-112050639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1317244	0.90[ASN][1000 genomes]
rs2399415	0.90[ASN][1000 genomes]
rs61651681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856005	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112041400-112050800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:112046600-112050800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:112046600-112051400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:112046600-112051600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:112046800-112051400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:112048600-112051600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:112050200-112050800	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr3:112050600-112050800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:112050600-112050800	Enhancers	Aorta	Aorta
10	chr3:112050600-112051000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr3:112050600-112051000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr3:112050600-112051000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:112050600-112051000	Flanking Active TSS	Placenta	Placenta
14	chr3:112050600-112051200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:112050600-112051400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:112050600-112051400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:112050600-112054200	Active TSS	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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