Variant report

Variant	rs59498316
Chromosome Location	chr7:118355989-118355990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1320842	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1919914	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2204271	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590600	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2689716	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2689717	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699703	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699773	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699774	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831109	chr7:118300593-118501778	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv608264	chr7:118326364-118372845	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links