Variant report

Variant	rs59498825
Chromosome Location	chr3:136041057-136041058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58821455	1.00[AFR][1000 genomes]
rs73863335	0.93[AFR][1000 genomes]
rs73863614	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4025	chr3:136017458-136065622	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135981200-136052000	Weak transcription	NH-A	brain
2	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
3	chr3:136016800-136045600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:136018200-136051400	Weak transcription	A549	lung
5	chr3:136020200-136045200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:136020400-136045200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:136020400-136045200	Weak transcription	Colonic Mucosa	Colon
8	chr3:136020600-136045000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:136020600-136045200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:136020800-136042200	Weak transcription	Placenta	Placenta
11	chr3:136020800-136043000	Weak transcription	HSMM	muscle
12	chr3:136020800-136045000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:136021000-136045400	Weak transcription	Gastric	stomach
14	chr3:136021000-136045600	Weak transcription	Osteobl	bone
15	chr3:136032800-136055400	Weak transcription	HUVEC	blood vessel
16	chr3:136036400-136044200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:136036800-136043400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:136037000-136041600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr3:136037000-136045200	Weak transcription	Brain Angular Gyrus	brain
20	chr3:136037200-136045200	Weak transcription	Fetal Stomach	stomach
21	chr3:136037600-136045200	Weak transcription	K562	blood
22	chr3:136037600-136045400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:136037800-136042200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:136038000-136042600	ZNF genes & repeats	Dnd41	blood
25	chr3:136038200-136041800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
26	chr3:136038200-136042800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr3:136038200-136043000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:136038400-136041200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr3:136038400-136042200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
30	chr3:136038400-136043200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:136038400-136043800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:136038600-136042200	Weak transcription	Fetal Thymus	thymus
33	chr3:136038600-136042600	ZNF genes & repeats	Adipose Nuclei	Adipose
34	chr3:136038600-136043400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
35	chr3:136038800-136041800	ZNF genes & repeats	Brain Hippocampus Middle	brain
36	chr3:136038800-136042200	ZNF genes & repeats	Primary T cells from cord blood	blood
37	chr3:136038800-136042200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:136038800-136042400	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr3:136038800-136042400	ZNF genes & repeats	Liver	Liver
40	chr3:136038800-136043000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
41	chr3:136039000-136041800	Weak transcription	HSMMtube	muscle
42	chr3:136039000-136042000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:136039000-136072400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr3:136039200-136062400	Weak transcription	Fetal Heart	heart
45	chr3:136039800-136042600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
46	chr3:136039800-136043400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:136040000-136041200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:136040000-136042200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
49	chr3:136040200-136041200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
50	chr3:136040200-136045000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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