Variant report

Variant	rs59510555
Chromosome Location	chr4:87767007-87767008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56719771	1.00[AFR][1000 genomes]
rs61214902	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
2	chr4:87757200-87769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:87759000-87768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:87760600-87767600	Enhancers	HMEC	breast
5	chr4:87762600-87768200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:87762800-87768200	Weak transcription	NHDF-Ad	bronchial
7	chr4:87763600-87769400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:87765000-87768000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:87765600-87768200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:87766200-87767200	Transcr. at gene 5' and 3'	NHEK	skin
11	chr4:87766200-87768200	Enhancers	HUVEC	blood vessel
12	chr4:87766200-87768400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:87766200-87768800	Weak transcription	Esophagus	oesophagus
14	chr4:87766600-87767200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:87766800-87767200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:87766800-87767200	Enhancers	Left Ventricle	heart
17	chr4:87766800-87767200	Enhancers	Ovary	ovary
18	chr4:87766800-87767200	Enhancers	Right Atrium	heart
19	chr4:87767000-87767200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr4:87767000-87767200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:87767000-87767200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr4:87767000-87767400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:87767000-87767600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:87767000-87771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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