Variant report

Variant	rs59511331
Chromosome Location	chr15:77991899-77991900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr15:77991850-77992079	GM12878	blood:	n/a	n/a
2	MYC	chr15:77991886-77992165	MCF-7	breast:	n/a	n/a
3	ELK1	chr15:77991744-77992029	Hela-S3	cervix:	n/a	n/a
4	MAZ	chr15:77991755-77992212	Hela-S3	cervix:	n/a	n/a
5	SUZ12	chr15:77991580-77992275	H1-hESC	embryonic stem cell:	n/a	n/a
6	TBP	chr15:77991751-77991926	K562	blood:	n/a	n/a
7	ESRRA	chr15:77991723-77992185	GM12878	blood:	n/a	n/a
8	MXI1	chr15:77991881-77992131	Hela-S3	cervix:	n/a	n/a
9	MYC	chr15:77991861-77991954	GM12878	blood:	n/a	n/a
10	GTF2F1	chr15:77991746-77992197	Hela-S3	cervix:	n/a	n/a
11	RCOR1	chr15:77991697-77992146	K562	blood:	n/a	n/a
12	ZNF263	chr15:77991579-77992664	HEK293-T-REx	kidney:	n/a	chr15:77992297-77992306 chr15:77992112-77992133 chr15:77992546-77992555
13	ZNF143	chr15:77991737-77992218	Hela-S3	cervix:	n/a	n/a
14	CTCF	chr15:77991844-77991900	GM19239	blood:	n/a	n/a
15	RCOR1	chr15:77991811-77992270	Hela-S3	cervix:	n/a	n/a
16	USF2	chr15:77991731-77992095	HepG2	liver:	n/a	n/a
17	GTF2F1	chr15:77991587-77992045	K562	blood:	n/a	n/a
18	MAFK	chr15:77991724-77992133	K562	blood:	n/a	n/a
19	NR2C2	chr15:77991562-77992263	GM12878	blood:	n/a	n/a
20	ZKSCAN1	chr15:77991744-77992166	Hela-S3	cervix:	n/a	n/a
21	USF2	chr15:77991731-77991999	Hela-S3	cervix:	n/a	n/a
22	RFX5	chr15:77991895-77992209	GM12878	blood:	n/a	n/a
23	ELK1	chr15:77991852-77992082	GM12878	blood:	n/a	n/a
24	CHD2	chr15:77991748-77992099	GM12878	blood:	n/a	n/a
25	MYC	chr15:77991857-77992156	MCF-7	breast:	n/a	n/a
26	USF2	chr15:77991763-77992037	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77986790..77988605-chr15:77991712..77993681,2	K562	blood:
2	chr15:77979748..77982431-chr15:77989857..77992919,3	K562	blood:

Variant related genes	Relation type
LINGO1	TF binding region
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv570141	chr15:77985554-78017361	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1008836	chr15:77991528-77992131	ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv827402	chr15:77991528-77992131	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv7618	chr15:77991614-77992141	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3397637	chr15:77991627-77993290	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3347687	chr15:77991786-77992077	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3358613	chr15:77991892-77992066	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77969200-78007600	Weak transcription	Right Atrium	heart
2	chr15:77991600-77992200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr15:77991600-77992200	ZNF genes & repeats	Brain Angular Gyrus	brain
4	chr15:77991600-77992200	ZNF genes & repeats	Fetal Brain Male	brain
5	chr15:77991800-77992000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr15:77991800-77992000	Bivalent/Poised TSS	Hela-S3	cervix
7	chr15:77991800-77992200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:77991800-77992200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:77991800-77992200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
10	chr15:77991800-77992200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:77991800-77992200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:77991800-77992200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
13	chr15:77991800-77992200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:77991800-77992200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:77991800-77992200	ZNF genes & repeats	Brain Substantia Nigra	brain
16	chr15:77991800-77992200	ZNF genes & repeats	Colon Smooth Muscle	Colon
17	chr15:77991800-77992200	ZNF genes & repeats	Esophagus	oesophagus
18	chr15:77991800-77992200	ZNF genes & repeats	Fetal Kidney	kidney
19	chr15:77991800-77992200	ZNF genes & repeats	Fetal Lung	lung
20	chr15:77991800-77992200	Bivalent Enhancer	Fetal Stomach	stomach
21	chr15:77991800-77992200	ZNF genes & repeats	Gastric	stomach
22	chr15:77991800-77992200	ZNF genes & repeats	Lung	lung
23	chr15:77991800-77992200	ZNF genes & repeats	Pancreas	Pancrea
24	chr15:77991800-77992200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
25	chr15:77991800-77992200	ZNF genes & repeats	Spleen	Spleen
26	chr15:77991800-77992200	Bivalent/Poised TSS	GM12878-XiMat	blood
27	chr15:77991800-77992200	ZNF genes & repeats	NHLF	lung

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