Variant report

Variant	rs59519327
Chromosome Location	chr12:118051329-118051330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1007112	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1850402	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2178580	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41459444	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56904629	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56951287	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59855752	0.82[EUR][1000 genomes]
rs61456812	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73407383	0.82[EUR][1000 genomes]
rs73411114	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73411142	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73411148	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73411182	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7953294	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv442289	chr12:118049324-118051527	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118045800-118051400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:118051200-118051400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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