Variant report
| Variant | rs595238 |
|---|---|
| Chromosome Location | chr6:56290923-56290924 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266793 | Chromatin interaction |
| ENSG00000220666 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11751569 | 0.90[YRI][hapmap] |
| rs11757910 | 0.89[YRI][hapmap] |
| rs11757941 | 0.90[YRI][hapmap] |
| rs11758339 | 0.83[YRI][hapmap] |
| rs11759493 | 0.91[YRI][hapmap] |
| rs13218268 | 0.90[YRI][hapmap] |
| rs2294697 | 0.90[YRI][hapmap] |
| rs2397221 | 0.90[YRI][hapmap] |
| rs2397226 | 0.83[YRI][hapmap] |
| rs4130060 | 0.83[YRI][hapmap] |
| rs4143828 | 0.91[YRI][hapmap] |
| rs4715630 | 0.91[YRI][hapmap] |
| rs636389 | 1.00[YRI][hapmap] |
| rs6911502 | 1.00[YRI][hapmap] |
| rs6915564 | 0.81[YRI][hapmap] |
| rs765289 | 0.84[CHB][hapmap] |
| rs7741295 | 0.91[YRI][hapmap] |
| rs7762629 | 0.91[YRI][hapmap] |
| rs7775847 | 0.90[YRI][hapmap] |
| rs9370535 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491933 | chr6:56177722-57171010 | Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv830666 | chr6:56243743-56419599 | Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs595238 | TRAM2 | cis | parietal | SCAN |
| rs595238 | TINAG | cis | parietal | SCAN |
| rs595238 | ZNF451 | cis | parietal | SCAN |
| rs595238 | LRRC1 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
