Variant report

Variant	rs59529850
Chromosome Location	chr3:110915134-110915135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1477836	0.87[AMR][1000 genomes]
rs1477849	0.87[AMR][1000 genomes]
rs2399372	0.87[AMR][1000 genomes]
rs57955193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59251988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6437946	0.87[AMR][1000 genomes]
rs6784517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632518	0.87[AMR][1000 genomes]
rs9850093	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110835600-110929600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:110853000-110919600	Weak transcription	Fetal Brain Male	brain
3	chr3:110869400-110929000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:110872600-110918800	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:110881000-110928000	Weak transcription	Osteobl	bone
6	chr3:110890800-110919800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:110892000-110915800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:110893000-110916200	Weak transcription	A549	lung
9	chr3:110894000-110922800	Weak transcription	Gastric	stomach
10	chr3:110894000-110924000	Weak transcription	Fetal Stomach	stomach
11	chr3:110894000-110934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:110894200-110924800	Weak transcription	Fetal Intestine Small	intestine
13	chr3:110894200-110925600	Weak transcription	NHLF	lung
14	chr3:110894200-110929600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:110899200-110935200	Weak transcription	Lung	lung
16	chr3:110901400-110918000	Weak transcription	Small Intestine	intestine
17	chr3:110903000-110918200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:110903400-110916400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:110903400-110929200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:110907600-110917200	Strong transcription	Fetal Lung	lung
21	chr3:110907800-110915400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:110908000-110917000	Strong transcription	Placenta	Placenta
23	chr3:110908600-110916000	Strong transcription	Dnd41	blood
24	chr3:110908800-110915800	Weak transcription	Brain Angular Gyrus	brain
25	chr3:110909200-110915400	Weak transcription	HUVEC	blood vessel
26	chr3:110909800-110915400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:110909800-110918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:110910000-110915600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:110910000-110917600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:110910000-110918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:110910200-110915200	Strong transcription	Ovary	ovary
32	chr3:110910200-110927200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:110910400-110917000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:110910400-110917200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:110910600-110916800	Weak transcription	Stomach Mucosa	stomach
36	chr3:110910600-110917600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:110910800-110916200	Strong transcription	HSMM	muscle
38	chr3:110911200-110916200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr3:110911200-110916600	Strong transcription	Fetal Intestine Large	intestine
40	chr3:110911200-110917000	Strong transcription	Liver	Liver
41	chr3:110911200-110917000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr3:110911400-110916800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr3:110911400-110919000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:110911600-110916000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:110911600-110916400	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr3:110912000-110923800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr3:110912200-110916800	Strong transcription	HSMMtube	muscle
48	chr3:110913000-110918800	Weak transcription	NHDF-Ad	bronchial
49	chr3:110913200-110918600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:110913400-110918800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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