The 2.0 version of rSNPBase
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Variant report
Variant
rs59530615
Chromosome Location
chr6:80785106-80785107
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr6:80784168..80786339-chr6:80787490..80789418,2
MCF-7
breast:
2
chr6:80713913..80716156-chr6:80784983..80787969,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000112742
Chromatin interaction
ENSG00000217377
Chromatin interaction
Extended variants information (count: 6 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:6)
rs_ID
r
2
[population]
rs2277101
1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3812150
1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9341804
1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9343963
1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9343964
1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9350840
1.00[EUR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links