Variant report

Variant	rs59535925
Chromosome Location	chr4:148721455-148721456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148713641..148716368-chr4:148719518..148721494,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1119887	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023844	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023845	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023846	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2134707	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55714518	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58068435	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs58274809	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs58762227	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60042554	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6811580	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148710400-148729600	Weak transcription	HSMM	muscle
2	chr4:148711000-148729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:148715200-148735200	Weak transcription	Stomach Mucosa	stomach
4	chr4:148715400-148722800	Weak transcription	Fetal Heart	heart
5	chr4:148716000-148722800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:148716000-148734800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:148716600-148732800	Weak transcription	Fetal Intestine Small	intestine
8	chr4:148719000-148722400	Enhancers	Fetal Thymus	thymus
9	chr4:148719400-148721800	Enhancers	Psoas Muscle	Psoas
10	chr4:148719600-148722200	Enhancers	Right Ventricle	heart
11	chr4:148720000-148721600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:148720000-148721800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:148720000-148721800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr4:148720000-148722200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:148720000-148724200	Enhancers	Colon Smooth Muscle	Colon
16	chr4:148720000-148724400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:148720200-148721600	Enhancers	Adipose Nuclei	Adipose
18	chr4:148720200-148721600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr4:148720200-148721800	Enhancers	Duodenum Mucosa	Duodenum
20	chr4:148720200-148721800	Enhancers	Stomach Smooth Muscle	stomach
21	chr4:148720200-148722000	Enhancers	Primary hematopoietic stem cells	blood
22	chr4:148720200-148722200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr4:148720200-148722200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:148720200-148722200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:148720400-148721600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:148720400-148721800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:148720400-148721800	Enhancers	Fetal Muscle Leg	muscle
28	chr4:148720400-148722000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr4:148720400-148722000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr4:148720400-148722200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:148720400-148729200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr4:148720600-148721800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr4:148720600-148721800	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr4:148720600-148722000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr4:148720600-148722000	Flanking Active TSS	GM12878-XiMat	blood
36	chr4:148720600-148729200	Weak transcription	HSMMtube	muscle
37	chr4:148720800-148721600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr4:148720800-148721600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr4:148720800-148721800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:148720800-148721800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr4:148720800-148721800	Enhancers	Dnd41	blood
42	chr4:148720800-148722800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr4:148721000-148721600	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr4:148721000-148721600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:148721000-148721600	Enhancers	Aorta	Aorta
46	chr4:148721000-148721800	Enhancers	Right Atrium	heart
47	chr4:148721200-148721600	Enhancers	H1 Cell Line	embryonic stem cell
48	chr4:148721200-148721600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:148721200-148721600	Enhancers	Colonic Mucosa	Colon
50	chr4:148721200-148721600	Enhancers	Gastric	stomach

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