Variant report

Variant	rs59540933
Chromosome Location	chr8:117815955-117815956
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10087312	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10105870	0.89[EUR][1000 genomes]
rs10112726	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10505289	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1133950	0.91[EUR][1000 genomes]
rs16888720	0.91[EUR][1000 genomes]
rs28554010	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60927118	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67123278	0.91[EUR][1000 genomes]
rs921066	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1027259	chr8:117790928-117842055	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034015	chr8:117790928-117843979	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117780400-117830200	Weak transcription	Aorta	Aorta
2	chr8:117813000-117816800	Enhancers	Placenta	Placenta
3	chr8:117813800-117818000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:117815400-117818400	Weak transcription	HSMM	muscle
5	chr8:117815400-117823000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:117815600-117818400	Weak transcription	HSMMtube	muscle
7	chr8:117815800-117818400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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