Variant report

Variant	rs59542180
Chromosome Location	chr6:73497994-73497995
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16882872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758723	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9442850	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73479600-73507800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:73489800-73507000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73492600-73508000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73494000-73500600	Weak transcription	Fetal Brain Male	brain
5	chr6:73494000-73500800	Weak transcription	Esophagus	oesophagus
6	chr6:73494000-73500800	Weak transcription	Psoas Muscle	Psoas
7	chr6:73494400-73500600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:73494600-73508200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:73496800-73498000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:73496800-73498000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:73496800-73498000	Enhancers	HSMM	muscle
12	chr6:73496800-73498000	Enhancers	NH-A	brain
13	chr6:73496800-73498000	Enhancers	NHDF-Ad	bronchial
14	chr6:73496800-73498200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:73496800-73498200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:73496800-73498200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:73496800-73498200	Enhancers	Osteobl	bone
18	chr6:73496800-73499000	Enhancers	Fetal Heart	heart
19	chr6:73496800-73499000	Enhancers	HMEC	breast
20	chr6:73496800-73499200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:73497000-73498000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:73497000-73498000	Enhancers	HSMMtube	muscle
23	chr6:73497000-73498200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:73497000-73498400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:73497000-73499200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:73497000-73499800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:73497400-73498000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:73497400-73498200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:73497600-73498000	Flanking Active TSS	NHEK	skin
30	chr6:73497800-73498800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:73497800-73498800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:73497800-73498800	Weak transcription	NHLF	lung
33	chr6:73497800-73500800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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