Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160395405..160397806-chr3:160539467..160541973,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12487861	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12637922	0.83[EUR][1000 genomes]
rs13068380	0.88[EUR][1000 genomes]
rs13073659	0.83[EUR][1000 genomes]
rs1378654	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1378657	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1378660	0.83[EUR][1000 genomes]
rs1455869	0.89[EUR][1000 genomes]
rs1598495	0.90[EUR][1000 genomes]
rs1829716	0.89[EUR][1000 genomes]
rs1851378	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1902282	0.86[ASN][1000 genomes]
rs1915929	0.85[ASN][1000 genomes]
rs2049214	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2049215	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2886909	0.83[EUR][1000 genomes]
rs6775743	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6794047	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs718757	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7618832	0.90[EUR][1000 genomes]
rs7630250	0.86[ASN][1000 genomes]
rs779058	0.86[ASN][1000 genomes]
rs972909	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9814394	0.90[EUR][1000 genomes]
rs9815499	0.90[EUR][1000 genomes]
rs9833075	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9866566	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv432495	chr3:160534298-160548298	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160530800-160543200	Weak transcription	Psoas Muscle	Psoas
2	chr3:160537800-160543400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:160540200-160541800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:160540800-160542600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:160541000-160543200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:160541200-160543200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:160541400-160543000	Enhancers	Skeletal Muscle Female	skeletal muscle

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