Variant report

Variant	rs59551707
Chromosome Location	chr3:103273206-103273207
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10937480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714829	0.84[EUR][1000 genomes]
rs2068840	0.80[EUR][1000 genomes]
rs57282780	0.84[EUR][1000 genomes]
rs66586322	0.80[EUR][1000 genomes]
rs6768706	0.84[EUR][1000 genomes]
rs73152817	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948426	chr3:103046716-103952548	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv949251	chr3:103046716-103977037	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv527886	chr3:103048891-103989893	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877245	chr3:103095170-103345913	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv460798	chr3:103097277-103274074	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv591197	chr3:103097277-103274074	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv877248	chr3:103140700-103345913	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv460800	chr3:103173919-103308760	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv591200	chr3:103173919-103308760	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
10	nsv877249	chr3:103173919-103345913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
11	nsv460801	chr3:103180397-103308760	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
12	nsv460802	chr3:103180397-103308760	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
13	nsv591201	chr3:103180397-103308760	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
14	esv2757882	chr3:103256253-103421162	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2759165	chr3:103256253-103421162	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103272800-103274200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:103273000-103273400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:103273200-103273600	Enhancers	Fetal Lung	lung
4	chr3:103273200-103273800	Active TSS	Fetal Kidney	kidney
5	chr3:103273200-103274000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:103273200-103274000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:103273200-103274000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:103273200-103274200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:103273200-103274600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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