Variant report

Variant	rs59561000
Chromosome Location	chr15:44243695-44243696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44240850..44243740-chr15:44243781..44246529,3	K562	blood:
2	chr15:44240850..44243740-chr15:44243781..44246073,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11853395	0.97[EUR][1000 genomes]
rs1561458	0.97[EUR][1000 genomes]
rs16948098	0.87[EUR][1000 genomes]
rs16949992	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623015	0.88[EUR][1000 genomes]
rs28654093	0.97[EUR][1000 genomes]
rs28729677	0.86[EUR][1000 genomes]
rs2918952	0.97[EUR][1000 genomes]
rs2929275	0.86[EUR][1000 genomes]
rs2929277	0.86[EUR][1000 genomes]
rs2929279	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2929282	0.88[EUR][1000 genomes]
rs2930523	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2930524	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2930525	0.86[EUR][1000 genomes]
rs34497759	0.88[EUR][1000 genomes]
rs4270152	0.93[EUR][1000 genomes]
rs4321171	0.97[EUR][1000 genomes]
rs481837	0.90[EUR][1000 genomes]
rs483800	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs492571	0.97[EUR][1000 genomes]
rs545119	0.94[EUR][1000 genomes]
rs56793082	0.90[EUR][1000 genomes]
rs74009159	0.97[EUR][1000 genomes]
rs74009160	0.97[EUR][1000 genomes]
rs8035382	0.88[EUR][1000 genomes]
rs8035402	0.88[EUR][1000 genomes]
rs8035689	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
5	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44225400-44246200	Weak transcription	Right Atrium	heart
2	chr15:44225600-44246200	Weak transcription	NH-A	brain
3	chr15:44227200-44251000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:44227400-44244200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:44229000-44245000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:44236400-44246200	Weak transcription	NHLF	lung
7	chr15:44238200-44245800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:44240400-44243800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:44241600-44246000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:44242000-44250400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:44242800-44243800	Weak transcription	Brain Anterior Caudate	brain
12	chr15:44242800-44244800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:44243000-44243800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:44243000-44244000	Weak transcription	Brain Angular Gyrus	brain
15	chr15:44243000-44244800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:44243000-44244800	Weak transcription	GM12878-XiMat	blood
17	chr15:44243000-44246200	Weak transcription	HSMMtube	muscle
18	chr15:44243200-44244200	Weak transcription	Fetal Heart	heart
19	chr15:44243400-44243800	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:44243600-44248200	Enhancers	Brain Substantia Nigra	brain

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