Variant report

Variant	rs59570335
Chromosome Location	chr8:102720886-102720887
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102720592..102723059-chr8:102730767..102733650,2	MCF-7	breast:
2	chr8:102715403..102717842-chr8:102720455..102723118,2	K562	blood:
3	chr8:102719687..102721668-chr8:102834149..102836612,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58785646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61332998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694455	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
2	chr8:102708800-102729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:102713800-102723200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102714600-102740800	Weak transcription	Primary T cells from cord blood	blood
6	chr8:102714800-102721600	Weak transcription	Fetal Thymus	thymus
7	chr8:102714800-102722400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:102716000-102721400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:102716000-102733000	Weak transcription	Fetal Heart	heart
10	chr8:102716200-102734000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:102716400-102722200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:102716400-102728800	Weak transcription	Fetal Stomach	stomach
13	chr8:102716600-102731200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:102716800-102722600	Weak transcription	Ovary	ovary
15	chr8:102716800-102730600	Weak transcription	Left Ventricle	heart
16	chr8:102718000-102722400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:102719600-102721200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:102719600-102722800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:102719800-102721000	Enhancers	GM12878-XiMat	blood
20	chr8:102720000-102721600	Strong transcription	Fetal Muscle Leg	muscle
21	chr8:102720200-102721000	Enhancers	Psoas Muscle	Psoas
22	chr8:102720600-102721000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:102720600-102721800	Weak transcription	Lung	lung

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