Variant report

Variant	rs59571956
Chromosome Location	chr11:86522478-86522479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86519601..86524011-chr11:86524298..86526997,5	MCF-7	breast:
2	chr11:86333716..86335655-chr11:86521325..86523278,2	MCF-7	breast:
3	chr11:86521236..86523996-chr17:56707243..56709705,2	MCF-7	breast:
4	chr11:85338593..85340102-chr11:86521457..86524280,2	MCF-7	breast:
5	chr11:86516893..86519182-chr11:86522443..86524775,2	K562	blood:

Variant related genes	Relation type
ENSG00000171204	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000150672	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10450663	0.82[AFR][1000 genomes]
rs73520773	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv523704	chr11:86508928-86528437	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2760199	chr11:86512312-86531118	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86512000-86527000	Weak transcription	Spleen	Spleen
2	chr11:86512800-86522800	Weak transcription	Pancreas	Pancrea
3	chr11:86513600-86525600	Weak transcription	Colonic Mucosa	Colon
4	chr11:86513800-86522600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:86514000-86523200	Weak transcription	Psoas Muscle	Psoas
6	chr11:86514000-86525400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:86514000-86530000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:86514200-86525600	Weak transcription	Fetal Lung	lung
9	chr11:86515800-86525200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:86516200-86523400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:86516600-86522800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:86516600-86525400	Weak transcription	Fetal Heart	heart
13	chr11:86516600-86527200	Weak transcription	Adipose Nuclei	Adipose
14	chr11:86516800-86527200	Weak transcription	Left Ventricle	heart
15	chr11:86517200-86523000	Weak transcription	Right Atrium	heart
16	chr11:86517200-86525400	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:86517200-86529800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:86517600-86522800	Weak transcription	Stomach Mucosa	stomach
19	chr11:86518800-86522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:86519200-86525400	Weak transcription	Aorta	Aorta
21	chr11:86519400-86523400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:86519800-86522600	Weak transcription	Fetal Stomach	stomach
23	chr11:86519800-86522800	Weak transcription	Fetal Intestine Small	intestine
24	chr11:86519800-86523200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:86519800-86523200	Weak transcription	Lung	lung
26	chr11:86519800-86523400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:86519800-86524400	Enhancers	Rectal Smooth Muscle	rectum
28	chr11:86519800-86525800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:86520000-86522600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:86520000-86522600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:86520000-86526800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:86520000-86549200	Weak transcription	Ovary	ovary
33	chr11:86520400-86523800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:86520600-86523400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr11:86520600-86523400	Genic enhancers	HUVEC	blood vessel
36	chr11:86520800-86523400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr11:86520800-86523400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr11:86521000-86551400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:86521400-86522600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr11:86521400-86523200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr11:86521600-86522600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:86521600-86522800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:86521600-86522800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:86521600-86528400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:86521800-86522800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:86521800-86525600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:86521800-86527800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:86522000-86523400	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr11:86522000-86523400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:86522000-86523600	Enhancers	HSMMtube	muscle

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