Variant report

Variant	rs59578902
Chromosome Location	chr4:95460088-95460089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:95453797..95455503-chr4:95458519..95460892,2	K562	blood:
2	chr4:95389173..95390941-chr4:95459071..95461024,2	K562	blood:
3	chr4:95373005..95374779-chr4:95458534..95460335,2	K562	blood:
4	chr4:95455418..95457640-chr4:95458337..95460219,4	K562	blood:

Variant related genes	Relation type
ENSG00000163110	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2555207	0.91[AFR][1000 genomes]
rs73833932	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95422400-95482800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:95442000-95469600	Weak transcription	Primary T cells from cord blood	blood
3	chr4:95449200-95470200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:95449800-95460400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:95450400-95465800	Weak transcription	Lung	lung
6	chr4:95453800-95460400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr4:95453800-95465400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:95454600-95460200	Enhancers	Colon Smooth Muscle	Colon
9	chr4:95454600-95462600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:95455800-95460200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:95456200-95463200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:95456400-95460600	Weak transcription	NHEK	skin
13	chr4:95456400-95462800	Enhancers	HSMMtube	muscle
14	chr4:95456600-95460200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:95456600-95460800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:95456800-95460800	Weak transcription	HMEC	breast
17	chr4:95456800-95465000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:95456800-95469800	Weak transcription	Ovary	ovary
19	chr4:95456800-95470200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:95457000-95469800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:95457400-95461400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:95457400-95461600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr4:95457400-95462000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:95457400-95462800	Weak transcription	Left Ventricle	heart
25	chr4:95457400-95465800	Weak transcription	Pancreas	Pancrea
26	chr4:95457400-95469800	Weak transcription	Fetal Muscle Leg	muscle
27	chr4:95457400-95470000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:95457400-95485400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:95457600-95465600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:95457800-95461200	Enhancers	Fetal Heart	heart
31	chr4:95457800-95466400	Weak transcription	Brain Substantia Nigra	brain
32	chr4:95458000-95461600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:95458000-95469800	Weak transcription	Small Intestine	intestine
34	chr4:95458000-95480400	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:95458200-95461600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr4:95458200-95462400	Weak transcription	Right Ventricle	heart
37	chr4:95458200-95465600	Weak transcription	NHLF	lung
38	chr4:95458200-95483000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr4:95458200-95488800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:95458400-95461000	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr4:95458400-95461000	Enhancers	HUVEC	blood vessel
42	chr4:95458400-95461600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr4:95458400-95461800	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr4:95458400-95461800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr4:95458400-95465200	Weak transcription	HepG2	liver
46	chr4:95458400-95468600	Weak transcription	Liver	Liver
47	chr4:95458400-95469800	Weak transcription	Fetal Intestine Large	intestine
48	chr4:95458800-95460400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:95459000-95461600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:95459000-95465200	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links