Variant report

Variant	rs59579544
Chromosome Location	chr2:173138479-173138480
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173126344..173128705-chr2:173137630..173139933,2	MCF-7	breast:
2	chr2:173137442..173141512-chr2:173291158..173293741,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226963	Chromatin interaction
ENSG00000091409	Chromatin interaction

rs_ID	r²[population]
rs73024156	1.00[EUR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173127600-173139800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173127600-173141600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:173133600-173149400	Weak transcription	Right Atrium	heart
4	chr2:173135400-173138600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:173135400-173140000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:173135600-173138800	Weak transcription	Lung	lung
7	chr2:173135600-173139000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:173135600-173141600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:173135800-173138600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:173135800-173138600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:173135800-173138600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr2:173135800-173138600	Weak transcription	Thymus	Thymus
13	chr2:173135800-173138800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:173135800-173138800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr2:173135800-173138800	Weak transcription	Gastric	stomach
16	chr2:173135800-173139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:173135800-173140000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:173135800-173140200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:173135800-173141400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:173135800-173141600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:173135800-173149200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr2:173136000-173138600	Weak transcription	Primary T cells from cord blood	blood
23	chr2:173136000-173138800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:173136800-173138600	Weak transcription	Fetal Thymus	thymus
25	chr2:173137400-173138600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:173137400-173138600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:173137600-173138600	Weak transcription	Primary hematopoietic stem cells	blood

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