Variant report

Variant	rs59588705
Chromosome Location	chr1:174706130-174706131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1016465	1.00[AMR][1000 genomes]
rs16847226	1.00[AMR][1000 genomes]
rs57654087	1.00[AMR][1000 genomes]
rs59123040	1.00[AMR][1000 genomes]
rs59297292	1.00[AMR][1000 genomes]
rs60510552	1.00[AMR][1000 genomes]
rs73040897	1.00[AMR][1000 genomes]
rs73040901	1.00[AMR][1000 genomes]
rs73042867	1.00[AMR][1000 genomes]
rs73042870	1.00[AMR][1000 genomes]
rs73042877	1.00[AMR][1000 genomes]
rs73042880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174678200-174708600	Weak transcription	Primary T cells from cord blood	blood
2	chr1:174678600-174706400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:174696600-174709400	Weak transcription	GM12878-XiMat	blood
4	chr1:174701800-174706400	Weak transcription	Fetal Heart	heart
5	chr1:174704600-174706800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:174705200-174706200	ZNF genes & repeats	Primary B cells from cord blood	blood
7	chr1:174705400-174706200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
8	chr1:174705400-174707000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr1:174705600-174706200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:174705800-174712200	Weak transcription	Left Ventricle	heart
11	chr1:174706000-174730400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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