Variant report
| Variant | rs59594539 |
|---|---|
| Chromosome Location | chr12:45952370-45952371 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| RNU6-671P | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11183089 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11183121 | 1.00[AMR][1000 genomes] |
| rs12302919 | 1.00[AMR][1000 genomes] |
| rs12305710 | 1.00[AMR][1000 genomes] |
| rs12309449 | 1.00[AMR][1000 genomes] |
| rs12315482 | 1.00[AMR][1000 genomes] |
| rs12321765 | 1.00[AMR][1000 genomes] |
| rs57162521 | 1.00[AMR][1000 genomes] |
| rs74081330 | 1.00[AMR][1000 genomes] |
| rs74081337 | 1.00[AMR][1000 genomes] |
| rs74081344 | 1.00[AMR][1000 genomes] |
| rs74081888 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832395 | chr12:45841765-46039297 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
