Variant report

Variant	rs59599299
Chromosome Location	chr6:144712524-144712525
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61269020	0.95[EUR][1000 genomes]
rs6570625	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7745285	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7746584	0.95[EUR][1000 genomes]
rs7746600	0.93[EUR][1000 genomes]
rs7763097	0.92[EUR][1000 genomes]
rs9496950	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144690800-144712800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144691600-144713800	Weak transcription	Thymus	Thymus
3	chr6:144697000-144714800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:144697200-144732600	Weak transcription	Gastric	stomach
5	chr6:144700600-144719200	Weak transcription	Ovary	ovary
6	chr6:144700800-144716000	Weak transcription	NHLF	lung
7	chr6:144700800-144719000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:144700800-144719000	Weak transcription	Esophagus	oesophagus
9	chr6:144700800-144719000	Weak transcription	Spleen	Spleen
10	chr6:144702800-144713000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:144702800-144720600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:144703200-144713400	Weak transcription	Primary T cells from cord blood	blood
13	chr6:144703200-144719000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:144703400-144714000	Weak transcription	Fetal Thymus	thymus
15	chr6:144703400-144717600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:144703800-144718600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:144704000-144718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:144704000-144719000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:144705200-144714600	Weak transcription	GM12878-XiMat	blood
20	chr6:144705600-144713400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:144705800-144722600	Weak transcription	Psoas Muscle	Psoas
22	chr6:144706200-144718200	Weak transcription	Fetal Intestine Small	intestine
23	chr6:144707600-144712800	Weak transcription	Lung	lung
24	chr6:144707600-144716000	Weak transcription	Osteobl	bone
25	chr6:144707600-144717800	Weak transcription	Dnd41	blood
26	chr6:144707600-144719000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:144707600-144719000	Weak transcription	Aorta	Aorta
28	chr6:144707600-144719000	Weak transcription	Pancreas	Pancrea
29	chr6:144708400-144715800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:144708400-144716200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:144708800-144713000	Strong transcription	Primary B cells from cord blood	blood
32	chr6:144709000-144716400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr6:144709000-144716800	Weak transcription	Adipose Nuclei	Adipose
34	chr6:144709000-144719200	Weak transcription	Fetal Kidney	kidney
35	chr6:144709200-144715000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:144709400-144718400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:144709600-144718400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:144710000-144716400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr6:144710200-144719000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:144710400-144713400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:144710600-144716000	Weak transcription	HSMM	muscle
42	chr6:144711000-144714400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:144711200-144712600	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:144711200-144712800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr6:144711400-144712800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:144711400-144712800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:144711600-144712600	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr6:144711600-144712600	Enhancers	HUVEC	blood vessel
49	chr6:144711800-144712600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr6:144711800-144712800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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