Variant report

Variant	rs59599535
Chromosome Location	chr7:28019024-28019025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10951189	0.93[EUR][1000 genomes]
rs12537454	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12537684	0.93[EUR][1000 genomes]
rs12671110	0.89[EUR][1000 genomes]
rs12671522	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35846584	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4308621	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4357200	0.91[EUR][1000 genomes]
rs4365989	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4422694	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4492256	0.91[EUR][1000 genomes]
rs57551874	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs66642060	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6965213	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73089188	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73089199	0.91[EUR][1000 genomes]
rs73301367	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1024819	chr7:27949955-28020969	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1336955	chr7:28019011-28019024	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28000600-28019400	Weak transcription	Pancreas	Pancrea
2	chr7:28000600-28021600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:28002800-28034600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:28006200-28019200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:28006200-28024800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:28006400-28031800	Weak transcription	NHDF-Ad	bronchial
7	chr7:28007000-28019200	Weak transcription	Esophagus	oesophagus
8	chr7:28009800-28021600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:28012400-28022200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:28012400-28028000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:28013400-28020000	Strong transcription	Primary B cells from cord blood	blood
12	chr7:28013400-28034200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:28015600-28032400	Weak transcription	Ovary	ovary
14	chr7:28017600-28021800	Weak transcription	Left Ventricle	heart
15	chr7:28017600-28042400	Weak transcription	Aorta	Aorta
16	chr7:28017800-28028000	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:28018000-28026200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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