Variant report
Variant |
rs5960402 |
Chromosome Location |
chrX:55207894-55207895 |
allele |
A/G
|
Outlinks |
Ensembl
 
UCSC
|
(count:20 , 50 per page) page:
1
No. |
Transcrition factor |
Chromosome Location |
Cell Line |
Cell type |
Cell Stage |
Matched TF binding sites |
1 |
ZBTB33 |
chrX:55207666-55208198 |
HepG2 |
liver: |
n/a
|
n/a
|
2 |
RXRA |
chrX:55207693-55208748 |
GM12878 |
blood: |
n/a
|
n/a
|
3 |
FOSL2 |
chrX:55207562-55207919 |
HepG2 |
liver: |
n/a
|
n/a
|
4 |
IRF4 |
chrX:55207811-55208375 |
GM12878 |
blood: |
n/a
|
n/a
|
5 |
BCL11A |
chrX:55207742-55207920 |
GM12878 |
blood: |
n/a
|
n/a
|
6 |
EP300 |
chrX:55207889-55208274 |
GM12878 |
blood: |
n/a
|
n/a
|
7 |
PAX5 |
chrX:55207810-55208740 |
GM12878 |
blood: |
n/a
|
n/a
|
8 |
TAF1 |
chrX:55207887-55208283 |
Hela-S3 |
cervix: |
n/a
|
n/a
|
9 |
POLR2A |
chrX:55207817-55208252 |
H1-hESC |
embryonic stem cell: |
n/a
|
n/a
|
10 |
BATF |
chrX:55207733-55207912 |
GM12878 |
blood: |
n/a
|
n/a
|
11 |
ZBTB33 |
chrX:55207687-55207916 |
K562 |
blood: |
n/a
|
n/a
|
12 |
RXRA |
chrX:55207810-55208666 |
HepG2 |
liver: |
n/a
|
n/a
|
13 |
ZBTB33 |
chrX:55207716-55208199 |
GM12878 |
blood: |
n/a
|
n/a
|
14 |
ZBTB33 |
chrX:55207705-55208211 |
GM12878 |
blood: |
n/a
|
n/a
|
15 |
HEY1 |
chrX:55207660-55207897 |
HepG2 |
liver: |
n/a
|
n/a
|
16 |
IRF4 |
chrX:55207811-55208216 |
GM12878 |
blood: |
n/a
|
n/a
|
17 |
SIX5 |
chrX:55207712-55207903 |
GM12878 |
blood: |
n/a
|
n/a
|
18 |
FOXA1 |
chrX:55207806-55208206 |
HepG2 |
liver: |
n/a
|
n/a
|
19 |
BHLHE40 |
chrX:55207721-55207895 |
HepG2 |
liver: |
n/a
|
n/a
|
20 |
POU2F2 |
chrX:55207810-55208260 |
GM12878 |
blood: |
n/a
|
n/a
|
Variant related genes |
Relation type |
MTND1P30 |
TF binding region |
MTND2P24 |
TF binding region |
ENSG00000229760 |
TF binding region |
rSNPs within LD-proxies of this variant (count:1)
rs_ID |
r2[population] |
rs1845442 |
0.85[YRI][hapmap] |
Chromatin state (count:0 , 50 per page) page:
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