Variant report

Variant	rs59606579
Chromosome Location	chr6:25608370-25608371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1003967	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1012898	0.86[ASN][1000 genomes]
rs10223506	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1028318	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1040417	0.86[ASN][1000 genomes]
rs1040418	0.85[ASN][1000 genomes]
rs1040419	0.84[EUR][1000 genomes]
rs10447385	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10447386	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10447387	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10447388	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10447389	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10484591	0.82[EUR][1000 genomes]
rs10946785	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10946786	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10946787	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10946788	0.82[EUR][1000 genomes]
rs10946789	0.82[EUR][1000 genomes]
rs11962024	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12183240	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12201186	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12524429	0.81[EUR][1000 genomes]
rs12524760	0.83[EUR][1000 genomes]
rs12525376	0.82[EUR][1000 genomes]
rs12527646	0.83[EUR][1000 genomes]
rs12528182	0.83[EUR][1000 genomes]
rs12528262	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12529390	0.82[EUR][1000 genomes]
rs1321251	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1321252	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1406925	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1406926	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1406927	0.84[EUR][1000 genomes]
rs150551	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1569483	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16890878	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16890900	0.84[EUR][1000 genomes]
rs1853049	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1980450	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1980451	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1980452	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1997672	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2072842	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2072844	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2072846	0.84[EUR][1000 genomes]
rs2072847	0.82[EUR][1000 genomes]
rs2072850	0.82[EUR][1000 genomes]
rs2072851	0.82[EUR][1000 genomes]
rs2077393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2205933	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2208041	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2223323	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2281070	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2281075	0.83[EUR][1000 genomes]
rs2294345	0.85[ASN][1000 genomes]
rs3804105	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804111	0.86[ASN][1000 genomes]
rs3804113	0.86[ASN][1000 genomes]
rs3804115	0.86[ASN][1000 genomes]
rs3804116	0.86[ASN][1000 genomes]
rs3804117	0.86[ASN][1000 genomes]
rs3804118	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3827500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4140640	0.82[EUR][1000 genomes]
rs4413605	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4711088	0.86[ASN][1000 genomes]
rs4712948	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4712949	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58262709	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60513855	0.82[EUR][1000 genomes]
rs6456687	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6903765	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903817	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6904044	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6908390	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6935612	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs714563	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73397619	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73397648	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73397653	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73399723	0.84[EUR][1000 genomes]
rs7383628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs742131	0.86[ASN][1000 genomes]
rs742132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746950	0.86[ASN][1000 genomes]
rs7754155	0.82[EUR][1000 genomes]
rs7757280	0.81[EUR][1000 genomes]
rs7761700	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7773087	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7774036	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7775000	0.82[EUR][1000 genomes]
rs876239	0.84[EUR][1000 genomes]
rs909663	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs909665	0.84[EUR][1000 genomes]
rs9295667	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9461188	0.82[EUR][1000 genomes]
rs9461189	0.82[EUR][1000 genomes]
rs9467538	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9467539	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9467541	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9467542	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9467552	0.82[EUR][1000 genomes]
rs976958	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:25556200-25618000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:25572000-25622200	Weak transcription	HSMMtube	muscle
4	chr6:25577200-25624800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:25580600-25608600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:25580600-25610200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:25581200-25622800	Weak transcription	Colonic Mucosa	Colon
8	chr6:25582000-25611400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:25582000-25626800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:25582400-25622200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:25583600-25623200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:25583800-25623200	Weak transcription	Esophagus	oesophagus
13	chr6:25585000-25627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:25585200-25629400	Weak transcription	Pancreas	Pancrea
15	chr6:25587400-25622400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:25589200-25623400	Weak transcription	HMEC	breast
17	chr6:25590800-25618000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:25592400-25625600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:25593200-25608800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:25593400-25609600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:25593600-25618600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:25594200-25629200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:25594400-25618200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:25594400-25627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:25594600-25627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:25594600-25629600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:25594800-25624600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:25595000-25626800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:25595000-25627000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:25595200-25610400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:25595600-25618000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:25595800-25610200	Weak transcription	Ovary	ovary
33	chr6:25596200-25609800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:25597800-25610800	Weak transcription	Left Ventricle	heart
35	chr6:25598000-25610400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:25598000-25622800	Weak transcription	Gastric	stomach
37	chr6:25599200-25622800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:25599400-25618600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:25600600-25612400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:25601000-25612200	Weak transcription	Placenta	Placenta
41	chr6:25601000-25619400	Weak transcription	Fetal Stomach	stomach
42	chr6:25601200-25612000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:25601400-25608800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:25601600-25626400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:25602600-25611400	Weak transcription	Fetal Lung	lung
46	chr6:25602800-25608800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:25602800-25623600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:25603400-25617800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:25603800-25624000	Weak transcription	Fetal Kidney	kidney
50	chr6:25604000-25609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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