Variant report

Variant	rs59617727
Chromosome Location	chr11:67954064-67954065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67945780..67947687-chr11:67952473..67954137,2	K562	blood:
2	chr11:67887418..67889782-chr11:67953453..67956174,2	MCF-7	breast:
3	chr11:67953602..67956359-chr11:67959250..67962005,3	MCF-7	breast:
4	chr11:67944100..67946000-chr11:67953590..67955606,2	MCF-7	breast:
5	chr11:67952322..67955302-chr11:67963551..67965315,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255236	Chromatin interaction
ENSG00000110066	Chromatin interaction
ENSG00000110721	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12286382	1.00[AMR][1000 genomes]
rs60701078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67915000-67973800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:67922600-67956600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr11:67924400-67956600	Strong transcription	Fetal Intestine Large	intestine
4	chr11:67924400-67956800	Strong transcription	Primary T cells from cord blood	blood
5	chr11:67924400-67957000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:67924600-67956400	Strong transcription	Fetal Muscle Trunk	muscle
7	chr11:67924600-67956600	Strong transcription	Fetal Muscle Leg	muscle
8	chr11:67925200-67955000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:67928000-67956600	Strong transcription	Duodenum Mucosa	Duodenum
10	chr11:67928600-67955400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:67928800-67954200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:67928800-67954600	Strong transcription	Dnd41	blood
13	chr11:67928800-67955200	Strong transcription	Primary B cells from peripheral blood	blood
14	chr11:67929000-67954400	Strong transcription	Adipose Nuclei	Adipose
15	chr11:67929000-67955200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr11:67929000-67957600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:67929200-67956800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:67929200-67957600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:67929600-67954800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:67930000-67955400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:67930400-67954200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:67931200-67954800	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:67931400-67957600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:67932400-67954400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:67932400-67956800	Strong transcription	Fetal Thymus	thymus
26	chr11:67932800-67954200	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:67934400-67955600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:67938200-67961200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:67938600-67960600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:67940400-67955600	Weak transcription	NHLF	lung
31	chr11:67941800-67958200	Weak transcription	Esophagus	oesophagus
32	chr11:67942200-67954800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:67942200-67959600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:67942800-67959200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:67943400-67960200	Weak transcription	Fetal Brain Male	brain
36	chr11:67945400-67955000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:67945800-67959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:67946200-67959800	Weak transcription	K562	blood
39	chr11:67946400-67958600	Strong transcription	Fetal Stomach	stomach
40	chr11:67946600-67959600	Weak transcription	Stomach Mucosa	stomach
41	chr11:67947200-67955600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:67947200-67959400	Weak transcription	A549	lung
43	chr11:67947400-67971200	Weak transcription	Fetal Kidney	kidney
44	chr11:67947400-67971400	Weak transcription	Spleen	Spleen
45	chr11:67947600-67960200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:67948800-67956200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:67949000-67954800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:67949000-67956400	Strong transcription	Fetal Intestine Small	intestine
49	chr11:67949000-67957000	Strong transcription	Fetal Brain Female	brain
50	chr11:67949200-67954600	Strong transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links