Variant report
| Variant | rs59626769 |
|---|---|
| Chromosome Location | chr12:57251707-57251708 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:57248287..57250888-chr12:57251550..57253920,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258816 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11171921 | 1.00[EUR][1000 genomes] |
| rs12298255 | 1.00[EUR][1000 genomes] |
| rs12299901 | 1.00[EUR][1000 genomes] |
| rs12301171 | 1.00[EUR][1000 genomes] |
| rs12304710 | 1.00[EUR][1000 genomes] |
| rs12306516 | 1.00[EUR][1000 genomes] |
| rs12316351 | 1.00[EUR][1000 genomes] |
| rs12317442 | 1.00[EUR][1000 genomes] |
| rs28753857 | 1.00[EUR][1000 genomes] |
| rs56951470 | 1.00[EUR][1000 genomes] |
| rs73338947 | 1.00[EUR][1000 genomes] |
| rs73338948 | 1.00[EUR][1000 genomes] |
| rs9290 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040850 | chr12:57055011-57679209 | Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 181 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
