Variant report

Variant	rs59629016
Chromosome Location	chr4:153025601-153025602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM160A1-6	chr4:153024779-153025789	XLOC_003738
2	lnc-FAM160A1-6	chr4:153024779-153025872	ENSG00000245954

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72734277	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153017200-153027000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:153021200-153029400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:153021400-153026200	Enhancers	Spleen	Spleen
4	chr4:153022000-153027000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:153022000-153027200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:153022200-153026200	Weak transcription	Hela-S3	cervix
7	chr4:153022400-153025800	Enhancers	Primary B cells from cord blood	blood
8	chr4:153022400-153027000	Weak transcription	Left Ventricle	heart
9	chr4:153022400-153027000	Weak transcription	HUVEC	blood vessel
10	chr4:153022400-153027200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:153022400-153027200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:153022400-153027400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:153022400-153027600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:153022400-153027600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:153022400-153029400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:153022600-153026000	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:153022600-153026400	Enhancers	Fetal Brain Male	brain
18	chr4:153022600-153027600	Enhancers	A549	lung
19	chr4:153022800-153027200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:153022800-153027400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:153022800-153028400	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:153023000-153026200	Weak transcription	Adipose Nuclei	Adipose
23	chr4:153023000-153027600	Weak transcription	Brain Angular Gyrus	brain
24	chr4:153023200-153027200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:153023600-153026000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:153023600-153027800	Weak transcription	Brain Substantia Nigra	brain
27	chr4:153023800-153026200	Weak transcription	Fetal Lung	lung
28	chr4:153023800-153027000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr4:153023800-153027000	Weak transcription	Osteobl	bone
30	chr4:153023800-153027200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:153023800-153027200	Weak transcription	HSMMtube	muscle
32	chr4:153023800-153027800	Weak transcription	Esophagus	oesophagus
33	chr4:153023800-153040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr4:153024000-153025800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr4:153024000-153026000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:153024000-153026000	Weak transcription	NHDF-Ad	bronchial
37	chr4:153024000-153026200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:153024000-153026600	Enhancers	Fetal Kidney	kidney
39	chr4:153024000-153027000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:153024000-153027000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:153024000-153027000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:153024000-153027000	Weak transcription	HMEC	breast
43	chr4:153024000-153027200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:153024000-153027600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr4:153024000-153027600	Weak transcription	Gastric	stomach
46	chr4:153024200-153026000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:153024200-153027000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:153024200-153027000	Weak transcription	NH-A	brain
49	chr4:153024200-153027800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:153024200-153031400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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