Variant report

Variant	rs59635124
Chromosome Location	chr1:159071908-159071909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3026924	1.00[AMR][1000 genomes]
rs57160839	1.00[AMR][1000 genomes]
rs59448416	1.00[AMR][1000 genomes]
rs59654278	1.00[AMR][1000 genomes]
rs6664453	1.00[AMR][1000 genomes]
rs7519244	1.00[AMR][1000 genomes]
rs7539283	1.00[AMR][1000 genomes]
rs7556046	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159067400-159072200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:159067400-159073400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:159070400-159072400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:159071800-159072200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:159071800-159072200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:159071800-159073000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
7	chr1:159071800-159073200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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