Variant report

Variant	rs59636257
Chromosome Location	chr8:67713327-67713328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67686015..67687996-chr8:67710738..67713498,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56960881	0.85[AMR][1000 genomes]
rs57792700	0.83[AMR][1000 genomes]
rs59128287	0.83[AMR][1000 genomes]
rs61435382	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67688000-67713800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:67688000-67783000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:67688200-67738000	Weak transcription	HSMM	muscle
4	chr8:67688400-67730400	Weak transcription	HSMMtube	muscle
5	chr8:67689000-67782600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:67691600-67730600	Weak transcription	Fetal Stomach	stomach
7	chr8:67695400-67721600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:67696600-67713800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:67696600-67718200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:67696600-67721400	Weak transcription	HMEC	breast
11	chr8:67696600-67742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:67696600-67767200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:67696800-67718000	Weak transcription	NHEK	skin
14	chr8:67696800-67783000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:67697400-67718400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:67698200-67719200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:67699000-67713800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:67700400-67758600	Weak transcription	Right Ventricle	heart
19	chr8:67701000-67713800	Weak transcription	Small Intestine	intestine
20	chr8:67702000-67718800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:67702200-67720000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:67704200-67713600	Weak transcription	Spleen	Spleen
23	chr8:67705000-67720200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr8:67705600-67713800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr8:67706000-67713600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr8:67706000-67718800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:67707600-67713600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:67707600-67723400	Weak transcription	Colonic Mucosa	Colon
29	chr8:67707600-67727200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr8:67707600-67772200	Weak transcription	Thymus	Thymus
31	chr8:67707600-67773000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:67707600-67777000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr8:67707600-67783000	Weak transcription	Gastric	stomach
34	chr8:67707800-67730800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:67707800-67733800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr8:67707800-67737800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr8:67707800-67756600	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:67708000-67714800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr8:67708000-67716600	Weak transcription	Primary T cells from cord blood	blood
40	chr8:67708000-67750600	Weak transcription	Left Ventricle	heart
41	chr8:67708200-67743600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr8:67708200-67749200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr8:67708400-67747200	Weak transcription	Lung	lung
44	chr8:67709200-67713600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:67709200-67717400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr8:67709800-67718200	Weak transcription	Fetal Kidney	kidney
47	chr8:67711200-67717200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr8:67711400-67713400	Strong transcription	Duodenum Mucosa	Duodenum
49	chr8:67711800-67713800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr8:67711800-67714600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links