Variant report

Variant	rs59653383
Chromosome Location	chr14:104274629-104274630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:104274231..104275062-chr14:104376739..104377463,3	MCF-7	breast:
2	chr14:104274497..104274998-chr14:104376418..104377156,2	MCF-7	breast:
3	chr14:104274623..104275848-chr14:104322262..104323054,3	MCF-7	breast:
4	chr14:104274481..104275414-chr14:104376428..104377300,2	K562	blood:
5	chr14:104273581..104275158-chr14:104312487..104314939,2	MCF-7	breast:
6	chr14:104272756..104274930-chr14:104362407..104364169,2	K562	blood:
7	chr14:104272328..104275733-chr14:104376448..104378285,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000088808	Chromatin interaction
ENSG00000258735	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs3212050	1.00[AMR][1000 genomes]
rs3212089	1.00[AMR][1000 genomes]
rs3212107	1.00[AMR][1000 genomes]
rs56074527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56178734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57361530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59026110	1.00[AMR][1000 genomes]
rs59851270	1.00[AMR][1000 genomes]
rs60050483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60707289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147292	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158230	1.00[AMR][1000 genomes]
rs74085290	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086466	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086471	1.00[AMR][1000 genomes]
rs74086472	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74088712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8004709	1.00[AMR][1000 genomes]
rs879724	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs909133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
9	nsv902320	chr14:104274294-104308095	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104218400-104277800	Weak transcription	Spleen	Spleen
2	chr14:104257800-104284000	Weak transcription	Gastric	stomach
3	chr14:104258800-104274800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr14:104262600-104277200	Weak transcription	Pancreas	Pancrea
5	chr14:104263000-104277400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:104263200-104281800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:104263800-104275800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:104268600-104285600	Weak transcription	Lung	lung
9	chr14:104271000-104285600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:104273600-104275400	Weak transcription	Stomach Mucosa	stomach
11	chr14:104273600-104284800	Weak transcription	Right Ventricle	heart
12	chr14:104273800-104279600	Weak transcription	Fetal Heart	heart
13	chr14:104274000-104275200	Weak transcription	Left Ventricle	heart
14	chr14:104274600-104274800	Enhancers	Colon Smooth Muscle	Colon
15	chr14:104274600-104275200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr14:104274600-104276000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links