Variant report

Variant	rs59657694
Chromosome Location	chr13:39958769-39958770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1323933	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39939600-39959600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr13:39939800-39959800	Weak transcription	Fetal Lung	lung
3	chr13:39945400-39959000	Weak transcription	Brain Substantia Nigra	brain
4	chr13:39946000-39959000	Weak transcription	NHDF-Ad	bronchial
5	chr13:39947600-39959000	Weak transcription	Right Atrium	heart
6	chr13:39947600-39960600	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:39947800-39959400	Weak transcription	Fetal Heart	heart
8	chr13:39952800-39959200	Weak transcription	Brain Anterior Caudate	brain
9	chr13:39954200-39959000	Weak transcription	Right Ventricle	heart
10	chr13:39954400-39959200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:39954400-39959600	Weak transcription	Osteobl	bone
12	chr13:39954600-39959000	Weak transcription	NH-A	brain
13	chr13:39954600-39959400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:39955600-39959000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:39955800-39959000	Weak transcription	Left Ventricle	heart
16	chr13:39957600-39959200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:39957800-39959000	Weak transcription	Aorta	Aorta
18	chr13:39958000-39959400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr13:39958000-39959400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr13:39958000-39960000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
21	chr13:39958000-39960800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:39958200-39959000	Weak transcription	Ovary	ovary
23	chr13:39958200-39959600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr13:39958200-39960400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
25	chr13:39958200-39960600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
26	chr13:39958400-39959600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:39958400-39959600	Enhancers	Adipose Nuclei	Adipose
28	chr13:39958400-39960800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr13:39958400-39962200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:39958600-39960400	Enhancers	Fetal Brain Female	brain
31	chr13:39958600-39962000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr13:39958600-39962000	Enhancers	Cortex derived primary cultured neurospheres	brain

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