Variant report

Variant	rs59659246
Chromosome Location	chr7:139408741-139408742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57460719	0.90[AFR][1000 genomes]
rs59195210	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469968	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474119	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73475966	1.00[AMR][1000 genomes]
rs73475971	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139403000-139415200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:139403200-139413200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:139403400-139409400	Weak transcription	Small Intestine	intestine
4	chr7:139403400-139411800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr7:139403400-139413200	Weak transcription	Placenta	Placenta
6	chr7:139403400-139414600	Weak transcription	A549	lung
7	chr7:139403600-139409600	Weak transcription	NH-A	brain
8	chr7:139403600-139413600	Weak transcription	HUVEC	blood vessel
9	chr7:139404000-139409200	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:139404000-139414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:139404200-139413000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:139404200-139414600	Weak transcription	Fetal Kidney	kidney
13	chr7:139404400-139408800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:139404400-139408800	Strong transcription	Duodenum Mucosa	Duodenum
15	chr7:139404400-139409200	Strong transcription	HepG2	liver
16	chr7:139404400-139409400	Enhancers	Fetal Heart	heart
17	chr7:139404400-139409400	Strong transcription	Fetal Stomach	stomach
18	chr7:139404400-139410000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr7:139404400-139410400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:139404400-139410600	Enhancers	Right Atrium	heart
21	chr7:139404400-139415200	Weak transcription	K562	blood
22	chr7:139404400-139417000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:139404600-139409000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:139404600-139409000	Strong transcription	Fetal Intestine Small	intestine
25	chr7:139404600-139409400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:139404600-139415000	Weak transcription	Hela-S3	cervix
27	chr7:139404600-139417400	Strong transcription	Primary T cells from cord blood	blood
28	chr7:139404800-139408800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:139404800-139408800	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr7:139404800-139408800	Genic enhancers	Brain Substantia Nigra	brain
31	chr7:139404800-139409200	Weak transcription	HSMM	muscle
32	chr7:139404800-139409400	Weak transcription	Ovary	ovary
33	chr7:139404800-139414000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:139405000-139408800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr7:139405000-139413000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr7:139405000-139414400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr7:139405200-139409200	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr7:139405200-139409400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr7:139405200-139409800	Weak transcription	Stomach Mucosa	stomach
40	chr7:139405200-139413400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr7:139405600-139408800	Strong transcription	Spleen	Spleen
42	chr7:139405600-139409400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:139405600-139414800	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:139405800-139409200	Strong transcription	Stomach Smooth Muscle	stomach
45	chr7:139406200-139409600	Genic enhancers	Fetal Thymus	thymus
46	chr7:139406200-139412200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:139406200-139413800	Weak transcription	HSMMtube	muscle
48	chr7:139406200-139414400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr7:139406400-139408800	Genic enhancers	Brain Hippocampus Middle	brain
50	chr7:139406400-139411400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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