Variant report

Variant	rs59661671
Chromosome Location	chr5:95589954-95589955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1123374	1.00[AMR][1000 genomes]
rs4601060	1.00[AMR][1000 genomes]
rs57467846	1.00[AMR][1000 genomes]
rs57603024	1.00[AMR][1000 genomes]
rs59889977	1.00[AMR][1000 genomes]
rs7720478	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95583200-95590200	Weak transcription	A549	lung
2	chr5:95583200-95595200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:95583800-95590800	Weak transcription	Aorta	Aorta
4	chr5:95583800-95595000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:95583800-95595000	Weak transcription	Psoas Muscle	Psoas
6	chr5:95584000-95590600	Weak transcription	HSMMtube	muscle
7	chr5:95584000-95592400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:95584600-95590000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:95585000-95594600	Weak transcription	HepG2	liver
10	chr5:95585400-95590200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:95585400-95590800	Weak transcription	Fetal Lung	lung
12	chr5:95586200-95591400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:95586200-95595000	Weak transcription	Pancreas	Pancrea
14	chr5:95587800-95595400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:95588000-95590400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:95588000-95590800	Enhancers	Hela-S3	cervix
17	chr5:95588000-95592000	Enhancers	HMEC	breast
18	chr5:95588200-95596600	Enhancers	HUVEC	blood vessel
19	chr5:95588400-95596000	Enhancers	Osteobl	bone
20	chr5:95589000-95590600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:95589200-95590200	Weak transcription	NH-A	brain
22	chr5:95589400-95590600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:95589400-95590800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:95589400-95592000	Enhancers	NHEK	skin
25	chr5:95589600-95590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:95589600-95590600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr5:95589600-95591600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr5:95589800-95596800	Enhancers	HSMM	muscle

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