Variant report

Variant	rs59662844
Chromosome Location	chr22:32352074-32352075
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32350878..32354651-chr22:32358565..32361250,3	K562	blood:
2	chr22:32346636..32349380-chr22:32349950..32352854,3	K562	blood:
3	chr22:32260147..32262062-chr22:32352068..32353695,2	K562	blood:

Variant related genes	Relation type
ENSG00000227519	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12106614	0.84[AFR][1000 genomes]
rs56864958	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58334257	1.00[EUR][1000 genomes]
rs58504390	1.00[EUR][1000 genomes]
rs59243243	1.00[EUR][1000 genomes]
rs59688361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61088020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7287793	1.00[EUR][1000 genomes]
rs7291269	1.00[EUR][1000 genomes]
rs73391043	1.00[EUR][1000 genomes]
rs73391045	1.00[EUR][1000 genomes]
rs73391054	1.00[EUR][1000 genomes]
rs73391057	1.00[EUR][1000 genomes]
rs73391072	1.00[EUR][1000 genomes]
rs73391075	1.00[EUR][1000 genomes]
rs73391078	1.00[EUR][1000 genomes]
rs73391079	1.00[EUR][1000 genomes]
rs73406096	1.00[EUR][1000 genomes]
rs73406102	1.00[EUR][1000 genomes]
rs73407905	1.00[EUR][1000 genomes]
rs73407909	1.00[EUR][1000 genomes]
rs73407924	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428046	chr22:32316302-32356963	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32342000-32354400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:32342400-32357600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:32343400-32355000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:32343600-32354600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:32344600-32352200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr22:32345800-32352600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr22:32346600-32352200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:32346600-32352800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr22:32346600-32356400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr22:32346800-32352200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr22:32346800-32354800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr22:32347200-32355000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr22:32347400-32352200	Weak transcription	Fetal Kidney	kidney
14	chr22:32347400-32352400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr22:32347600-32353000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr22:32348200-32352200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr22:32348200-32352200	Weak transcription	Esophagus	oesophagus
18	chr22:32348200-32352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr22:32348200-32352600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr22:32348400-32353200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr22:32348400-32354800	Strong transcription	Dnd41	blood
22	chr22:32348600-32353600	Strong transcription	GM12878-XiMat	blood
23	chr22:32348800-32354200	Strong transcription	K562	blood
24	chr22:32348800-32355000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr22:32349000-32352200	Weak transcription	Aorta	Aorta
26	chr22:32349000-32352200	Weak transcription	HSMMtube	muscle
27	chr22:32349000-32352400	Weak transcription	Ovary	ovary
28	chr22:32349000-32352600	Enhancers	Primary T cells from cord blood	blood
29	chr22:32349200-32354800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr22:32349400-32352200	Weak transcription	HepG2	liver
31	chr22:32349800-32352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr22:32349800-32353200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr22:32349800-32354400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr22:32349800-32354800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr22:32349800-32355000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr22:32349800-32355000	Strong transcription	Fetal Intestine Large	intestine
37	chr22:32350000-32352400	Weak transcription	NHLF	lung
38	chr22:32350200-32352800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr22:32350200-32355000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr22:32350400-32353000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr22:32350400-32354200	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr22:32350600-32353200	Strong transcription	Fetal Intestine Small	intestine
43	chr22:32350600-32354200	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr22:32350600-32354200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr22:32350600-32354200	Strong transcription	A549	lung
46	chr22:32350600-32354800	Strong transcription	Brain Germinal Matrix	brain
47	chr22:32350600-32355000	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr22:32350600-32355000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr22:32350600-32355000	Strong transcription	Fetal Stomach	stomach
50	chr22:32350600-32355000	Strong transcription	Rectal Mucosa Donor 29	rectum

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