Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28595585	0.87[EUR][1000 genomes]
rs55646352	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55869062	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55975666	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56190755	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56664111	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57593509	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57960711	0.84[EUR][1000 genomes]
rs59621415	0.84[EUR][1000 genomes]
rs60634107	0.84[EUR][1000 genomes]
rs61334447	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73337744	0.84[EUR][1000 genomes]
rs73337753	0.84[EUR][1000 genomes]
rs73337757	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73337765	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73337767	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73337782	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73337783	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73337790	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73339755	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73339759	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs901380	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv969021	chr5:177060702-177111251	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177054400-177096000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:177068800-177091800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:177076800-177098200	Weak transcription	Fetal Stomach	stomach
4	chr5:177077000-177098200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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