Variant report

Variant	rs59673134
Chromosome Location	chr5:76072335-76072336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11954867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11956340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57431204	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57433717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7708264	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv965590	chr5:76061083-76081416	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv462213	chr5:76067624-76112869	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv598682	chr5:76067624-76112869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76061600-76074800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:76068600-76074600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:76068800-76074400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:76069400-76072400	Enhancers	A549	lung
5	chr5:76070600-76074400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:76070600-76074600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:76070600-76080600	Weak transcription	Fetal Intestine Small	intestine
8	chr5:76070800-76073400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:76070800-76074400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:76071800-76073000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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