Variant report

Variant	rs59675031
Chromosome Location	chr2:7142524-7142525
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7142289..7146091-chr2:7146579..7150616,5	K562	blood:
2	chr2:7142289..7144797-chr2:7147566..7149207,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60290358	0.86[AFR][1000 genomes]
rs73914446	0.86[AFR][1000 genomes]
rs73914454	0.86[AFR][1000 genomes]
rs73914472	1.00[AFR][1000 genomes]
rs73914473	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833326	chr2:6985027-7142564	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7101200-7144000	Weak transcription	Aorta	Aorta
2	chr2:7101200-7154000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:7115800-7148800	Weak transcription	Esophagus	oesophagus
4	chr2:7121200-7145400	Weak transcription	Thymus	Thymus
5	chr2:7121400-7148200	Weak transcription	Fetal Intestine Small	intestine
6	chr2:7124000-7157600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:7126600-7147600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:7126800-7148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr2:7127200-7154000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:7127600-7143600	Weak transcription	HepG2	liver
11	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr2:7131200-7146800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:7131400-7150200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:7131600-7154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr2:7131600-7154200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr2:7132800-7146600	Weak transcription	Fetal Heart	heart
18	chr2:7133400-7147400	Weak transcription	Fetal Kidney	kidney
19	chr2:7133800-7147400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:7133800-7147600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr2:7133800-7147800	Weak transcription	Fetal Brain Female	brain
22	chr2:7133800-7150800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr2:7134400-7147400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:7135000-7146800	Weak transcription	Lung	lung
25	chr2:7135200-7145400	Weak transcription	Fetal Brain Male	brain
26	chr2:7135400-7145000	Weak transcription	Brain Germinal Matrix	brain
27	chr2:7135800-7146800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:7137200-7146200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:7137200-7149800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:7137400-7160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr2:7137800-7144400	Weak transcription	Adipose Nuclei	Adipose
32	chr2:7138000-7147000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr2:7138600-7142600	Enhancers	Primary B cells from peripheral blood	blood
34	chr2:7138600-7147600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr2:7139000-7144200	Weak transcription	Right Ventricle	heart
36	chr2:7139200-7143600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr2:7139200-7146600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr2:7139400-7147000	Weak transcription	Fetal Lung	lung
39	chr2:7139600-7143600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr2:7139600-7146200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr2:7139600-7147000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr2:7139600-7149800	Weak transcription	Ovary	ovary
43	chr2:7139800-7144200	Weak transcription	Fetal Thymus	thymus
44	chr2:7139800-7147000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:7140000-7143800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr2:7140200-7143400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr2:7140200-7143600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr2:7140200-7144000	Weak transcription	Brain Substantia Nigra	brain
49	chr2:7140200-7146400	Weak transcription	Left Ventricle	heart
50	chr2:7140200-7146600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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