Variant report

Variant	rs59676190
Chromosome Location	chr2:234229415-234229416
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58639825	1.00[AMR][1000 genomes]
rs59967591	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6727660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73995904	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7589330	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584699	chr2:234182240-234255547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv584700	chr2:234199401-234364426	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002075	chr2:234225979-234277508	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234222200-234230200	Weak transcription	GM12878-XiMat	blood
2	chr2:234222600-234229800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:234223600-234245400	Weak transcription	Pancreas	Pancrea
4	chr2:234227600-234229800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:234228400-234240000	Weak transcription	Fetal Intestine Small	intestine
6	chr2:234228600-234231400	Enhancers	Fetal Brain Male	brain
7	chr2:234229200-234229600	Bivalent Enhancer	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links