Variant report

Variant	rs59683116
Chromosome Location	chr11:68505307-68505308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68502677..68505481-chr11:68816330..68817860,2	K562	blood:
2	chr11:68455795..68461839-chr11:68497219..68505693,11	K562	blood:
3	chr11:68451207..68463147-chr11:68494634..68505693,16	K562	blood:
4	chr11:68502756..68505398-chr11:68505427..68507325,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069482	Chromatin interaction
ENSG00000162341	Chromatin interaction
ENSG00000132749	Chromatin interaction

rs_ID	r²[population]
rs10736668	1.00[EUR][1000 genomes]
rs10750828	1.00[EUR][1000 genomes]
rs2513288	1.00[EUR][1000 genomes]
rs2513301	1.00[EUR][1000 genomes]
rs3136542	1.00[EUR][1000 genomes]
rs61583631	1.00[EUR][1000 genomes]
rs7948045	1.00[EUR][1000 genomes]

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68493800-68506400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:68494000-68518600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:68498000-68517400	Weak transcription	Right Atrium	heart
4	chr11:68498600-68511400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:68499600-68516400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:68499800-68517200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:68501600-68511000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:68501600-68511000	Weak transcription	Primary T cells from cord blood	blood
9	chr11:68501800-68511400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:68501800-68518600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:68502200-68508800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:68502600-68515200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:68502800-68517600	Weak transcription	Spleen	Spleen
14	chr11:68502800-68518400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:68503000-68506200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:68503000-68506400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:68503000-68517400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:68503000-68517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:68503000-68518000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:68503200-68505400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:68503400-68511400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:68503400-68513800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:68503600-68511200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:68503600-68518600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:68503800-68506400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:68503800-68507600	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr11:68504000-68518600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:68504200-68506000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:68504200-68506000	Strong transcription	Fetal Intestine Small	intestine
30	chr11:68504200-68506200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:68504400-68506600	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr11:68504600-68505400	Strong transcription	Thymus	Thymus
33	chr11:68504600-68506000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:68504600-68506000	Strong transcription	Pancreas	Pancrea
35	chr11:68504600-68517800	Weak transcription	Primary B cells from cord blood	blood
36	chr11:68504800-68510400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:68505000-68505400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:68505000-68506000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:68505000-68506200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:68505000-68507400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr11:68505000-68508600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:68505000-68512000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:68505200-68507200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr11:68505200-68514800	Strong transcription	Primary hematopoietic stem cells	blood

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