Variant report

Variant	rs59686671
Chromosome Location	chr4:57375892-57375893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57371959..57374819-chr4:57375390..57378214,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1140982	0.82[EUR][1000 genomes]
rs1142851	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11934479	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11934636	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11940993	0.84[EUR][1000 genomes]
rs12640212	0.86[AMR][1000 genomes]
rs12643989	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12643996	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12644498	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12649799	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12650288	0.84[EUR][1000 genomes]
rs1579019	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17086773	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17086801	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17086804	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17086830	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17086838	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17086868	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17086898	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17086909	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17086919	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17086922	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34398021	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34419325	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3796540	0.86[AMR][1000 genomes]
rs3796549	0.84[EUR][1000 genomes]
rs3796550	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4076103	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55909588	0.86[AMR][1000 genomes]
rs56362514	0.84[EUR][1000 genomes]
rs57245446	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59828502	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6830145	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6831869	0.80[AMR][1000 genomes]
rs7688482	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999639	chr4:56942917-57401310	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1014045	chr4:56942917-57404511	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv530121	chr4:57167367-57695576	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv829941	chr4:57359551-57553136	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59686671	SRP72	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57370200-57377400	Weak transcription	K562	blood
2	chr4:57372600-57396200	Weak transcription	Aorta	Aorta
3	chr4:57372800-57378200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:57372800-57382800	Weak transcription	Pancreas	Pancrea
5	chr4:57372800-57395800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:57373000-57377200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:57373000-57377400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:57373000-57377600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:57373000-57378000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:57373000-57379800	Weak transcription	Stomach Mucosa	stomach
11	chr4:57373000-57395800	Weak transcription	Brain Anterior Caudate	brain
12	chr4:57373200-57377400	Weak transcription	Fetal Heart	heart
13	chr4:57373200-57396200	Weak transcription	Fetal Brain Female	brain
14	chr4:57373200-57396400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:57373400-57383000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:57373600-57396200	Weak transcription	Brain Germinal Matrix	brain

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