Variant report

Variant	rs59694569
Chromosome Location	chr14:66309102-66309103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66295863..66298342-chr14:66306411..66309225,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55861984	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61989046	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61990008	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7160924	0.91[EUR][1000 genomes]
rs7494067	0.84[AMR][1000 genomes]
rs7494719	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8022645	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8022817	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv1052389	chr14:66255781-66321562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1038849	chr14:66259700-66329919	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv564953	chr14:66287921-67046960	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
10	nsv1050485	chr14:66308283-67109270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66302200-66313800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:66305000-66309800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:66306800-66309800	Weak transcription	Fetal Thymus	thymus
4	chr14:66307000-66309200	Weak transcription	Primary T cells from cord blood	blood
5	chr14:66307400-66309400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:66307400-66309400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr14:66307400-66317400	Weak transcription	Spleen	Spleen
8	chr14:66307600-66310000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:66307600-66312400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:66307800-66309800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:66307800-66310200	Weak transcription	Brain Germinal Matrix	brain
12	chr14:66308000-66309400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr14:66308000-66309400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:66308200-66309400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:66308200-66309600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:66308200-66309600	Weak transcription	Dnd41	blood
17	chr14:66308200-66318600	Weak transcription	Pancreas	Pancrea
18	chr14:66308400-66310000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:66309000-66311000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:66309000-66313400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr14:66309000-66313600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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